Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00671
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.2  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   5.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   6.8  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   6.8  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   6.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.0  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 487 LKVFLLL-RHYTQ-SHINDLLVENKMSNITC 401
           L  FL+L R  T+ + IND  + N M N+TC
Sbjct: 658 LAAFLVLERPKTKLTGINDARLRNTMENLTC 688


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 260 GNTSWMPPALLKHS 219
           G+ SW PPA+ K S
Sbjct: 144 GDVSWKPPAIYKSS 157


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 448 ATEYNVSKAKILLICPVINLTAQITLISNQIK 543
           A E      + L +C  +NL   ++L   Q+K
Sbjct: 22  ALENKFKTTRYLSVCERLNLALSLSLTETQVK 53


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 108 GGWITIYLILSTNIAKKPNGSFV 176
           G  + +Y+ LST   + P+  FV
Sbjct: 69  GNGMVVYIFLSTKSLRTPSNLFV 91


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 451 TEYNVSKAKILLICPVINLTAQITLISNQIKEGL 552
           TE  V  AK +  CP    T Q   +  +++EG+
Sbjct: 65  TEEEVVLAKTIAECPESENTVQKAALVLRLREGI 98


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 108 GGWITIYLILSTNIAKKPNGSFV 176
           G  + +Y+ LST   + P+  FV
Sbjct: 35  GNGMVVYIFLSTKSLRTPSNLFV 57


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +3

Query: 405 VILDILFSTSKSLICD*V*CLKSKNTFNLSRYQSYCTNHLDFE 533
           +ILD L    K  + D    L+ K       Y  Y  N  D+E
Sbjct: 194 IILDALEELDKRGVMDFQIGLQRKKDTTFDDYLDYAINPFDYE 236


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +3

Query: 405 VILDILFSTSKSLICD*V*CLKSKNTFNLSRYQSYCTNHLDFE 533
           +ILD L    K  + D    L+ K       Y  Y  N  D+E
Sbjct: 194 IILDALEELDKRGVMDFQIGLQRKKDTTFDDYLDYAINPFDYE 236


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 260 GNTSWMPPALLKHS 219
           G   W PPA+ K S
Sbjct: 135 GRVEWKPPAIYKSS 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,799
Number of Sequences: 438
Number of extensions: 3720
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)