Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00670
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 68 5e-12
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 33 0.14
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 31 0.98
05_01_0030 + 195663-196691 29 2.3
07_03_0808 - 21668100-21669092 28 6.9
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 28 6.9
01_07_0264 - 42388455-42388565,42388656-42388688,42388792-423889... 28 6.9
01_06_0049 - 25953811-25954131,25954223-25954903 27 9.2
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 68.1 bits (159), Expect = 5e-12
Identities = 31/54 (57%), Positives = 41/54 (75%)
Frame = +1
Query: 454 LLKPGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSIITKSIRST 615
L++PG +N VTEAIQK++A Y CK +EG+LSHQLKQF IDG K +++ S T
Sbjct: 106 LVRPGKKNKDVTEAIQKVAAAYDCKIVEGVLSHQLKQFVIDGNKVVLSVSNADT 159
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/42 (59%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Frame = +3
Query: 291 ILKKGD-LAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADV 413
I +KGD + D+G HIDGFIAVVAHT V+ + V+G+AADV
Sbjct: 51 ICEKGDSYIRDDMGCHIDGFIAVVAHTHVIHDGAVTGKAADV 92
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = +1
Query: 13 KEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEE 174
+E E ++ VVTKYK A I+N L+ V++ C P A +ICE GD + ++
Sbjct: 9 EEKELDLSSSDVVTKYKDAADIINNALKLVVSLCKPKAKIVDICEKGDSYIRDD 62
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 258 HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 371
H++P + + +L+ D+ K+D G HIDG+I A TV
Sbjct: 305 HWTPNSGDKT-VLQYDDVMKLDFGTHIDGYIVDCAFTV 341
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 30.7 bits (66), Expect = 0.98
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 258 HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 371
H++P + +L+ D+ K+D G HI+G+I A TV
Sbjct: 249 HWTPNGGDKT-VLQYDDVMKLDFGTHINGYIVDSAFTV 285
>05_01_0030 + 195663-196691
Length = 342
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Frame = -1
Query: 272 NGRKVTMQLFTETHVENAMP-FLESFSFLKTLLVSSNTSLS---PNSHISLADASGTHFA 105
+GR V++ +F +T++ A+P + + + L+TLL+ SLS P+S +L D TH
Sbjct: 76 SGRVVSLSVFQDTNLTGAIPDAIANLTHLRTLLLHHLPSLSGPIPDSLAALTDL--THLT 133
Query: 104 MT 99
++
Sbjct: 134 IS 135
>07_03_0808 - 21668100-21669092
Length = 330
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 167 NTSLSPNSHISLADASGTHFAMTCSRTRFTICPA 66
+ S P+S S + A+G F TC TR++ P+
Sbjct: 172 SASPRPSSPESFSSATGARFRSTCFSTRYSAIPS 205
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 291 ILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGR 401
++ +LA DLG +DG +AV A V+ ++E R
Sbjct: 447 VVPDDNLAAGDLGDELDGIVAVTADAEVLDDAERGAR 483
>01_07_0264 -
42388455-42388565,42388656-42388688,42388792-42388905,
42389011-42389100,42389173-42389268,42389363-42389404,
42389498-42389608,42392258-42392440,42392518-42392961
Length = 407
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 204 LQERHCIFNMRFCEQLHCHFSPIASEP-DYILKKGDLAK 317
++ERH + +RFC+ L+ F +P +Y +G+L K
Sbjct: 135 VKERHARYRIRFCKMLNKEFEDTMKDPAEY--SRGELLK 171
>01_06_0049 - 25953811-25954131,25954223-25954903
Length = 333
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 215 PFLESFSFLKTLLVSSNTSLSPNSHISLAD 126
PF SF F ++++ SLSP+S SL D
Sbjct: 45 PFSPSFGFSSPSPLATSVSLSPSSSASLVD 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,625,950
Number of Sequences: 37544
Number of extensions: 299676
Number of successful extensions: 816
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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