Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00670
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)              114   5e-26
SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)         35   0.047
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)                  31   0.76 
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_56797| Best HMM Match : BK_channel_a (HMM E-Value=6.2)              28   5.4  
SB_30199| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.4  
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)                    28   5.4  
SB_26743| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)                   28   7.1  
SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21)          27   9.4  

>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
          Length = 465

 Score =  114 bits (275), Expect = 5e-26
 Identities = 53/89 (59%), Positives = 68/89 (76%)
 Frame = +1

Query: 7   SEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKV 186
           S +E E TIAED+VVTKYK+AG + NR+L ++I       +AR +CE GD L+LEET+KV
Sbjct: 8   SGEEEEPTIAEDVVVTKYKMAGDMANRILLKLIEAANAGTTARTLCEKGDALILEETDKV 67

Query: 187 FKKEKDSKKGIAFSTCVSVNNCIVTFRPL 273
           +KKEK+ KKGIAF TC+SVNNC+  F PL
Sbjct: 68  YKKEKELKKGIAFPTCISVNNCVCHFSPL 96



 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 37/56 (66%), Positives = 43/56 (76%), Gaps = 3/56 (5%)
 Frame = +3

Query: 255 CHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVG---ESEVSGRAADV 413
           CHFSP+ SEPD  L  GDL KID G HIDGFIAV+ HT+VVG   E++V+GR ADV
Sbjct: 91  CHFSPLLSEPDITLNDGDLVKIDFGVHIDGFIAVIGHTIVVGCSKENKVTGRKADV 146



 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 30/47 (63%), Positives = 38/47 (80%)
 Frame = +1

Query: 454 LLKPGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSII 594
           ++KPG EN  VTE +QK++  + CKPIEGMLSHQLK+  IDGEK+II
Sbjct: 160 MVKPGAENSTVTELVQKVAESFKCKPIEGMLSHQLKRNVIDGEKAII 206


>SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)
          Length = 708

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 240 CEQLHC--HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 371
           C   HC  H++P A +   +L   D+ KID G HI+G I   A TV
Sbjct: 8   CSLNHCAAHYTPNAGDKT-VLSYDDVCKIDFGTHINGRIVDCAFTV 52



 Score = 35.1 bits (77), Expect = 0.047
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 240 CEQLHC--HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 371
           C   HC  H++P A +   +L   D+ KID G HI+G I   A TV
Sbjct: 114 CSLNHCAAHYTPNAGDKT-VLSYDDVCKIDFGTHINGRIVDCAFTV 158



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +1

Query: 139 ICEFGDKLVLEETNKVFKKEKDSK--KGIAFSTCVSVNNCIVTFRP 270
           +C+ G+   ++ET + ++ E D K  KG+AF T  S+N+C   + P
Sbjct: 82  LCDVGE--AIQETMESYEVELDGKTYKGLAFPTGCSLNHCAAHYTP 125


>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
          Length = 1205

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
 Frame = +1

Query: 442 RLFVLLKPGTENYAVTEAIQKISAEYGC---------KPIEGMLSHQLKQFRIDGEKSII 594
           R+  LL  GTE   +   ++K +A+Y C           IE  LSH  K  ++ G K II
Sbjct: 15  RVVSLLGAGTEEITIESLVEKYTAKYNCGLELWKGEFVKIEAFLSHSCKA-KVTGSKVII 73

Query: 595 TK 600
            K
Sbjct: 74  IK 75


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
 Frame = -3

Query: 588 TLLSINT-ELLQLV*EHTLNWLTTIFSTN------FLNGFSDCIVLSTRLQENEEPLH*H 430
           T+++INT +LL ++  +T   LT I   N       +N     IV++T  Q      H H
Sbjct: 358 TVITINTHKLLIVIIINTHKLLTVIIINNHKLLTVIINTHKLLIVITTHPQVTHR-YHQH 416

Query: 429 DELPTK-HLQHVQ---RLHFHPQLLYELQQ 352
            +L  + H QH Q   R H HPQ+ +   Q
Sbjct: 417 PQLTHRYHHQHPQVIHRYHQHPQVTHRYHQ 446


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = -3

Query: 438  H*HDELPT------KHLQHVQRLHFHPQLLYELQQL*IHQCEHQDLSWLNLLFSE-CNPV 280
            H ++ +PT      + + +VQ+L F   +   ++ L  H+C H+DL+  N+L      P+
Sbjct: 883  HSYENIPTVSTEQPEEISYVQKLKFAHGIAQGMRHLEKHKCVHRDLAARNVLLGRGLEPI 942

Query: 279  RSQWAKS 259
             S +  S
Sbjct: 943  VSDFGLS 949


>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/61 (26%), Positives = 34/61 (55%)
 Frame = -1

Query: 263 KVTMQLFTETHVENAMPFLESFSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTR 84
           +V + +FTE   +     +++++ +K +L  + + LS NS +++  AS TH    C R+ 
Sbjct: 414 EVVVVIFTEGRRDTFRFAIDTWASVKEVLELTLSCLS-NSDVNIEHASTTHVLKICGRSE 472

Query: 83  F 81
           +
Sbjct: 473 Y 473


>SB_56797| Best HMM Match : BK_channel_a (HMM E-Value=6.2)
          Length = 220

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 1/161 (0%)
 Frame = -1

Query: 554 WCESIPSIGLQPYSALIF*MASVTA*FSVPGFRRTKSRFTSMMSCQQNICSTSRDFTFTH 375
           WC +  S      +   +        F V  F   K R    ++  + IC       F  
Sbjct: 65  WCHNPSSQSCNSQAPRSYVFTYFFTAFKVRMFTAKKGRLK--IAFNEKICGFKWAEIFEE 122

Query: 374 NYCMSYNSYKSINVSTKIYLG*ISFFQNVIRFARNGRKVTMQLFTETHVENAMPFLESFS 195
            +CM Y   + I  ST++++  +       +    G  ++++++ E      +  +  FS
Sbjct: 123 PFCMKY---EPIVKSTRVFVNPVRCSSK--KRTTKGSSISVEIYKEIQRRKGLGLMYVFS 177

Query: 194 FLKTLLVSSNTSLSPNSHI-SLADASGTHFAMTCSRTRFTI 75
           +    LVS++  L+ +  + SL   + T    T  + + T+
Sbjct: 178 YKNNSLVSTSFLLAESRQVHSLQQKANTTTQATNRKRQKTL 218


>SB_30199| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 480

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 517 YGCKPIEGMLSHQLKQFRIDGEKSIITKSIRS 612
           YGC+PIEG  S ++K +  +  +++    +RS
Sbjct: 157 YGCEPIEGKKSLRMKLYSCEPIEAVNRSKVRS 188


>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
          Length = 1558

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 124 ASAREICEFGDKLVLEETNKVFKKEKDSKKG 216
           A   E+ E G K +LEE  + F+KE + ++G
Sbjct: 877 AMKNELKEMGKKQILEEKERKFRKEMELQEG 907


>SB_26743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 463 PGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKS 588
           P  + + VTEAI ++      KPIE    HQ  + +I  + S
Sbjct: 11  PSRDCFLVTEAISQLRRPLDRKPIESAKKHQASKKQICAKSS 52


>SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 444 PLH*HDELPTKHLQHVQRLHFH 379
           PLH HD +PT    H+ RLH H
Sbjct: 91  PLHTHDSIPTPTYPHL-RLHTH 111


>SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)
          Length = 238

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 236 THVENAMPFLESFSFLKTLLVSSNTSLSP 150
           TH ++ + F E+F+FL++L ++  T   P
Sbjct: 147 THQDDILAFRENFAFLRSLYLTDGTDTPP 175


>SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21)
          Length = 518

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = +1

Query: 10  EKEVEKTIAE---DLVVTKYKLAGQIVNRVLEQVIAKC-VPDASAREICEFGDKLVLEET 177
           + E  K +AE   DL +  +K+      R+L+ + A C VP+   R IC   DKL  + T
Sbjct: 211 DAECVKIVAEILADLELGDFKIKVNH-RRLLDGMFAVCGVPEGKFRTICSAVDKLD-KAT 268

Query: 178 NKVFKKEKDSKKGI 219
            +  +KE   +KG+
Sbjct: 269 WEEVRKEMVDEKGL 282


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,676,464
Number of Sequences: 59808
Number of extensions: 364280
Number of successful extensions: 1303
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)