Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00669
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1000 - 23220878-23221821,23222164-23223001 83 3e-16
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 67 2e-11
03_02_0187 - 6248226-6249226,6249296-6250148 66 4e-11
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 62 6e-10
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348... 38 0.007
01_03_0010 - 11608537-11608786,11608816-11608940,11609152-116092... 31 0.78
12_02_0291 + 16951154-16952740 29 5.5
11_02_0045 - 7705728-7707581 28 7.3
01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836... 28 7.3
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 28 9.6
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 82.6 bits (195), Expect = 3e-16
Identities = 36/81 (44%), Positives = 52/81 (64%)
Frame = +2
Query: 539 ATIRGNSFFGVRHGLETLSQLIVYDDIRNNLLIVRDVTIKDRPVYPYRGILLDTARNFYS 718
AT+ + +G GLET SQL + +L+ V ++DRP+YP+RG++LDT R ++
Sbjct: 143 ATVTAATAWGAMRGLETFSQLAWWCGRERAVLVAAGVRVEDRPLYPHRGLMLDTGRTYFP 202
Query: 719 IESIKRTIDAMAAVNLNTFHW 781
+ I RTIDAMAA +N FHW
Sbjct: 203 VADILRTIDAMAANKMNVFHW 223
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 66.9 bits (156), Expect = 2e-11
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +2
Query: 533 VNATIRGNSFFGVRHGLETLSQLIVYDDIRNNLLIVRDV--TIKDRPVYPYRGILLDTAR 706
+ A I + FG H LET SQL +D + L+ ++ +I D P +PYRG+L+DT+R
Sbjct: 125 IYAQIEAQTVFGALHALETFSQLCNFD-FTSRLIELQSAPWSITDMPRFPYRGLLIDTSR 183
Query: 707 NFYSIESIKRTIDAMAAVNLNTFHW 781
++ + IK ID+M LN HW
Sbjct: 184 HYLPVPVIKSVIDSMTYSKLNVLHW 208
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 65.7 bits (153), Expect = 4e-11
Identities = 38/92 (41%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = +2
Query: 515 STSSDKVNATIRGNSFFGVRHGLETLSQLIVYDD---IRNNLLIVRDVTIKDRPVYPYRG 685
S D +A I + +G GLET SQL ++ + I DRP + +RG
Sbjct: 137 SVLPDSGSADISAATPWGAIRGLETFSQLAWAGGGAASGGQPIVPSGIEISDRPHFTHRG 196
Query: 686 ILLDTARNFYSIESIKRTIDAMAAVNLNTFHW 781
ILLDTARNFY + I T+ AMA LN FHW
Sbjct: 197 ILLDTARNFYPVRDILHTLRAMAFNKLNVFHW 228
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 61.7 bits (143), Expect = 6e-10
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +2
Query: 539 ATIRGNSFFGVRHGLETLSQLIVYD-DIRNNLLIVRDVTIKDRPVYPYRGILLDTARNFY 715
ATI N+ +G GLET SQL V++ D +N + I+D P + +RG+LLDT+R+F
Sbjct: 140 ATIEANTIYGAIRGLETFSQLCVFNYDTKNVEVRHAPWYIEDEPRFAFRGLLLDTSRHFL 199
Query: 716 SIESIKRTIDAMA 754
++ IK+ ID+M+
Sbjct: 200 PVDVIKQVIDSMS 212
>01_06_1626 -
38734128-38734160,38734386-38734560,38734819-38734878,
38734961-38735059,38735191-38735224,38735315-38735374,
38735596-38735696,38735949-38736014,38736695-38736825,
38736946-38737038,38737273-38737338,38737459-38737494,
38738308-38738382,38738475-38738792
Length = 448
Score = 38.3 bits (85), Expect = 0.007
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = +2
Query: 518 TSSDKVNATIRGNSFFGVRHGLETLSQLIVYDDIRNNLLIVRDVTIKDRPVYPYRGILLD 697
T+ + I + FG H L+ S+L+ L +D +D + R + D
Sbjct: 121 TAGYPLRVQIEAQTVFGALHALQNSSRLL------GEFLTHQDFLTEDFLLDQMR-LHAD 173
Query: 698 TARNFYSIESIKRTIDAMAAVNLNTFHW 781
T+R++ + IK+ ID MA LN HW
Sbjct: 174 TSRHYLPVTVIKKVIDTMAYSKLNVLHW 201
>01_03_0010 -
11608537-11608786,11608816-11608940,11609152-11609217,
11609741-11609872,11610507-11610608,11610743-11610940,
11611015-11611161,11611321-11611431,11613241-11613780,
11613847-11614003,11614148-11614297,11614375-11614514,
11615346-11615468,11615561-11615677,11617184-11617357,
11617768-11617909,11618076-11618194,11619773-11619955
Length = 991
Score = 31.5 bits (68), Expect = 0.78
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +2
Query: 185 RSLSSVWKPARCS-VTIMVSSGRNHDRDKSG*LPLQD*YEHHRHSDHQARKERRPPHSGC 361
+ LSS+ PA C + +++ +H +G L L +H HSDH + + P
Sbjct: 482 QKLSSLKAPASCQDIPLLLPHEPDHQASNNGELGLNGLDNNHGHSDHPNKTHWKQPIPNR 541
Query: 362 RQV*DTGFQ 388
+ DT Q
Sbjct: 542 KAKQDTSLQ 550
>12_02_0291 + 16951154-16952740
Length = 528
Score = 28.7 bits (61), Expect = 5.5
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 4/121 (3%)
Frame = +1
Query: 139 CENNRCTKIRNEPENKEPVLSLEACKMFCDDYGLLWPKPRSRQ--IWVTSSPRLI*TPST 312
C N R I EN+E V S + +M + L PK + I VT P P
Sbjct: 92 CNNGRDDPIVTLDENQEVVDSFDGARM----WWRLCPKASKNKGAITVTYYPGEADKPRC 147
Query: 313 FR--SPSKERATTSSQRLPTGLRHWFPVPCLKASRRRLQENQSQFI*SMTILISENSPWT 486
F+ + R + LP+ +R W + + RR + ++ S+ + N P T
Sbjct: 148 FKLVFHKRHRQLVLNSYLPSVVRRWRELTAMNRQRRLFTNHANEAKKSVWTSVPYNPPAT 207
Query: 487 W 489
+
Sbjct: 208 F 208
>11_02_0045 - 7705728-7707581
Length = 617
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 58 ICIYSVFIIIECGIPTAAEEHSLWRWTCENNRCTKIRNEPENKEPVLSLEACKMFCDD 231
+C +++ ++ GIP E + L RWT N + + P N + L+ C C D
Sbjct: 524 LCRHALRVLTAIGIPVLPENYILKRWT-RNAKNNILSQVPANTKGSLAWR-CNDLCRD 579
>01_01_1060 -
8363272-8365912,8366375-8366443,8366479-8366843,
8367403-8367550,8367630-8367873,8368105-8368407,
8368639-8368851,8368927-8369002,8369533-8369561,
8369610-8369984,8371784-8371927,8374053-8374086
Length = 1546
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 303 TIDIQITKQGKSDDLLTAAADRFKTLVSSSVPKGFSAKAAGKSVTVYLVNDNPYIREF 476
T D +T GKS + AAAD +T++ SS+P + TVY NP R +
Sbjct: 722 TNDTWLTDSGKSS--IMAAADELETMLPSSIP--YMTARVFTMDTVYNFTVNPRDRHW 775
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 307 STFRSPSKERATTSSQRLPTGLRHWFPVPCLKASRRR 417
S RSP+++R + +R P R P P ++ RRR
Sbjct: 224 SRSRSPARDRGSPPRRRSPPARRERSPAPRSRSPRRR 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,407,608
Number of Sequences: 37544
Number of extensions: 472627
Number of successful extensions: 1264
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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