Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00669
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical pr...    66   3e-11
AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidas...    66   3e-11
AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical...    30   1.6  
Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical
           protein T14F9.3 protein.
          Length = 555

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 30/81 (37%), Positives = 49/81 (60%)
 Frame = +2

Query: 539 ATIRGNSFFGVRHGLETLSQLIVYDDIRNNLLIVRDVTIKDRPVYPYRGILLDTARNFYS 718
           A I   + +G    +E+LS L+ YD  ++    +R V I D+P +P RGI++D++R+F S
Sbjct: 127 AVINAQTVWGALRAMESLSHLVFYDH-KSQEYQIRTVEIFDKPRFPVRGIMIDSSRHFLS 185

Query: 719 IESIKRTIDAMAAVNLNTFHW 781
           +  IKR ++ M+   LN  HW
Sbjct: 186 VNVIKRQLEIMSMNKLNVLHW 206


>AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 555

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 30/81 (37%), Positives = 49/81 (60%)
 Frame = +2

Query: 539 ATIRGNSFFGVRHGLETLSQLIVYDDIRNNLLIVRDVTIKDRPVYPYRGILLDTARNFYS 718
           A I   + +G    +E+LS L+ YD  ++    +R V I D+P +P RGI++D++R+F S
Sbjct: 127 AVINAQTVWGALRAMESLSHLVFYDH-KSQEYQIRTVEIFDKPRFPVRGIMIDSSRHFLS 185

Query: 719 IESIKRTIDAMAAVNLNTFHW 781
           +  IKR ++ M+   LN  HW
Sbjct: 186 VNVIKRQLEIMSMNKLNVLHW 206


>AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical
           protein Y77E11A.12b protein.
          Length = 644

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = +1

Query: 310 TFRSPSKERATTSSQRLPTGLRHWFPVPCLKASRRRLQENQSQFI*S-----MTILISEN 474
           T RS   ++++ S  R    LR+  P P +     + +  +S  I S     +++L +EN
Sbjct: 88  TSRSAHFKKSSPSMVRGGPQLRNSSPRPLILQQHAKWRNEESSSISSTDSEDISLLPNEN 147

Query: 475 SPWTWMRATSSNFIN 519
             W W+R  + +F++
Sbjct: 148 QKWEWLRREAKSFVD 162


>Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical
           protein K09E4.2 protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 550 WKLFLRRPSRSGDALSANRVRRHQE 624
           W L + RP+R GD++S   +RR ++
Sbjct: 410 WHLIVTRPARPGDSVSRETLRRLEQ 434


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,941,403
Number of Sequences: 27780
Number of extensions: 389789
Number of successful extensions: 1093
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)