Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00668
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0202 + 6366066-6367292,6367529-6367753,6368422-6368799 31 1.0
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668... 30 2.4
03_06_0252 - 32656068-32656276,32656361-32656550,32656682-326567... 30 2.4
03_06_0209 - 32377045-32378008,32378086-32378210,32378772-323788... 30 2.4
07_01_0792 + 6166230-6166795,6166879-6166981,6167089-6167227,616... 29 3.2
05_03_0008 + 7332224-7332700,7335136-7335153,7335747-7335848,733... 29 3.2
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 29 5.6
05_03_0242 + 10823312-10823342,10823662-10823732,10824010-108240... 29 5.6
04_01_0197 + 2323790-2324098,2324145-2324774 28 7.4
03_01_0269 + 2080338-2080508,2081086-2081335,2081432-2082648,208... 28 7.4
01_05_0759 + 24963621-24963902,24963955-24964719 28 7.4
02_01_0298 + 1998278-1998655,1998836-1999111,1999203-1999271,199... 28 9.7
01_06_1476 + 37640278-37642551 28 9.7
>03_02_0202 + 6366066-6367292,6367529-6367753,6368422-6368799
Length = 609
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 573 MNLTGFNKMLEELDLHKLIDGGQTTDSTAYFHVQTTKDEEVVSCVN 710
+ +TGF + EE+DL L+ G ++ + H +D E VS N
Sbjct: 508 VTITGFTRTDEEIDLVSLLFGSSSSIMSVTIHATEKEDTEKVSLKN 553
>03_06_0253 -
32666152-32666360,32666443-32666632,32666764-32666862,
32666999-32667094,32667408-32668361,32668683-32668901,
32669282-32669491,32669617-32669879,32670041-32671717,
32672702-32672852
Length = 1355
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 588 FNKMLEELDLHKLIDGGQTTDSTAYFHVQT 677
FN+ + E D HK+IDG +S YF+++T
Sbjct: 752 FNQAMSEAD-HKIIDGEVKLESQYYFYMET 780
>03_06_0252 -
32656068-32656276,32656361-32656550,32656682-32656780,
32656917-32657012,32657200-32658153,32658476-32658694,
32658911-32659120,32659241-32659503,32659605-32661281,
32663639-32663792
Length = 1356
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 588 FNKMLEELDLHKLIDGGQTTDSTAYFHVQT 677
FN+ + E D HK+IDG +S YF+++T
Sbjct: 753 FNQAMSEAD-HKIIDGEVKLESQYYFYMET 781
>03_06_0209 -
32377045-32378008,32378086-32378210,32378772-32378816,
32379009-32379295,32379778-32381509,32381631-32381971,
32383753-32383876,32384484-32384722,32385156-32385534
Length = 1411
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 391 SRASVRMPILHLSVCPRESRKCGRRTVDKTCKLSPNDV 278
S S+R P+L S C + R+V + C+ SPN++
Sbjct: 429 SGCSMRSPLLDCSFCGSTVKIWDFRSVSRPCRFSPNNI 466
>07_01_0792 +
6166230-6166795,6166879-6166981,6167089-6167227,
6167641-6167918,6168448-6168612
Length = 416
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 453 PSEAPEDQTEGSLEEGREDVDPELYVAQIFGMYGDAASMTMNLTGFNKMLEELDLHKLID 632
PS+ P +++E V E Y+A+ FG + M +G NK EE +++
Sbjct: 214 PSDEPPHVEGDAVKESAGHVGVEKYIAEQFGSWASFRPQYMIGSGNNKDCEEWFFDRIVR 273
Query: 633 G 635
G
Sbjct: 274 G 274
>05_03_0008 +
7332224-7332700,7335136-7335153,7335747-7335848,
7336927-7337202,7337474-7337674
Length = 357
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 420 REKEAGFEKPLPSEAPEDQTEGSLEEGREDVDPELYV-AQIFGMYGDAASMTMNLTGFNK 596
+E+E G + P EA E+Q EG++E+ D E+ V + GDA GF+
Sbjct: 97 QEEEDGQNEQQPQEAGEEQDEGAVEDADMDDAGEVLVGGEDAHGNGDAQEGQGESEGFDP 156
Query: 597 MLEELDLHK 623
E L++ K
Sbjct: 157 NPEVLEVLK 165
>10_01_0217 +
2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 588 FNKMLEELDLHKLIDGGQTTDSTAYFHVQT 677
FN+ + E D HK+IDG S YF+++T
Sbjct: 745 FNQAMSEAD-HKIIDGEVKLGSQYYFYMET 773
>05_03_0242 +
10823312-10823342,10823662-10823732,10824010-10824021,
10827329-10827394,10827564-10827766,10827977-10828266,
10828377-10828468,10829876-10830344,10830670-10830978,
10831290-10831364,10831457-10831614
Length = 591
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 397 PWSRASVRMPILHLSVCPRESRKCGRRTVDKTCKLSP 287
P S A V+ P +HL C R + +D C++SP
Sbjct: 200 PSSPARVQSPWIHLPPCIRAHKLESEAVIDFVCRVSP 236
>04_01_0197 + 2323790-2324098,2324145-2324774
Length = 312
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 462 APED--QTEGSLEEGREDVDPELYVAQIFGMYGDAASMTMNLTGFNKMLEELDLHK 623
APED + E E+ +DPEL+V + G Y D + +EL+ HK
Sbjct: 188 APEDVREDEEKQEKFLAGMDPELFVRLVSGDYPDFQRLVDKSIRLEAKHKELESHK 243
>03_01_0269 +
2080338-2080508,2081086-2081335,2081432-2082648,
2082933-2083083,2083247-2083563
Length = 701
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 400 HMSLELEEKRRLDSRNRYHQKLQKIRQKDRLK 495
++SLE ++R+LD+ RY +KL K+ LK
Sbjct: 435 NLSLENAKQRKLDTAARYAKKLLKLEAGSELK 466
>01_05_0759 + 24963621-24963902,24963955-24964719
Length = 348
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 273 NVTSFGDSLHV-LSTVRRPHLRLSRGHTDRWSIGIRTEARDHGPHVPRIRREKEAG 437
N +SF L+ +S ++ P + H DRW + R +PRI R K+ G
Sbjct: 74 NFSSFVRQLNTYVSIIQSPAPGFRKVHPDRWEFAHESFLRGQTHLLPRIVRRKKRG 129
>02_01_0298 +
1998278-1998655,1998836-1999111,1999203-1999271,
1999881-2000073,2000161-2000555
Length = 436
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/97 (21%), Positives = 37/97 (38%)
Frame = +3
Query: 393 HGPHVPRIRREKEAGFEKPLPSEAPEDQTEGSLEEGREDVDPELYVAQIFGMYGDAASMT 572
H HVP + E A F +PLP + D T G+ ++ + GM D +++
Sbjct: 89 HAEHVPVMLGEVLAAFRRPLPLRSFVDCTLGAAGHSLAMMEAHPEMELYIGMDVDPSALE 148
Query: 573 MNLTGFNKMLEELDLHKLIDGGQTTDSTAYFHVQTTK 683
+ + L + + + AY H + K
Sbjct: 149 IGRSRIEAFLANRETNGDDEDASQGTLRAYTHAKNFK 185
>01_06_1476 + 37640278-37642551
Length = 757
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 687 HPSSSERGSK-PCCRSFGHHRSAYAGLVPQA 598
H SS+ GS PC FG+ R +G+ P+A
Sbjct: 224 HTSSTAGGSPAPCASFFGYGRGTASGVAPRA 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,714,809
Number of Sequences: 37544
Number of extensions: 386116
Number of successful extensions: 1117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -