Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00668
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.5  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   9.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 694 LSAALTVQNWLHGEHEVK 747
           L+  + + +W HG +E+K
Sbjct: 171 LNCTIHIASWSHGSNEIK 188


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 692 SCQLR*QFRTGYTVNTRLKPTT 757
           +C  R  +  G T N+RL+P T
Sbjct: 221 NCDQRINYHFGMTDNSRLEPGT 242


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 343 VDIQTDGVLAYEPRL 387
           +D  TD VLAY+P++
Sbjct: 728 LDYLTDTVLAYKPKI 742


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 648 DSTAYFHVQTTKDE 689
           + + YFH+Q TK +
Sbjct: 71  EESGYFHIQATKPD 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,782
Number of Sequences: 438
Number of extensions: 3830
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)