Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00667
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    29   0.55 
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    28   0.96 
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   3.9  

>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 291 KYDYVFTYLHLFSTFFLPQVSTISRKVLRSNRQPGDDSAILIYGILG 151
           KYD++ TY   F +F+LP    +   + R++ Q   D+ I +  +LG
Sbjct: 188 KYDFIITYKTSFYSFYLPIKCAL--LLSRNSNQKAYDTTIKLSKLLG 232


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 368 TLFRFYLLLPFHISLINVIKY*YALTQLLENSYTSSANASLDFMNIAVSL 517
           T+F  Y   PF I  +N+I      T++  N   +   A +D++N A  L
Sbjct: 259 TMFSCYCEEPFTIEPVNIISEHNGCTRVTPNLNPTCFKADIDYLNEACGL 308


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 8  RRCSGEVWVVLDWLIVAVGA 67
          ++ S  VW VL W++ AVGA
Sbjct: 9  KKFSTTVWHVLSWILYAVGA 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,896
Number of Sequences: 5004
Number of extensions: 41613
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)