Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00667
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972...    29   3.0  
10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334     27   9.2  
04_04_1509 - 34074206-34074398,34074506-34074777,34075411-340756...    27   9.2  

>09_02_0475 +
           9724676-9724936,9725518-9726216,9726273-9726596,
           9726900-9727847
          Length = 743

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 216 KVLRSNRQPGDDSAILIYGILGLLKSTLLSFHYQEKEQG 100
           K L S   P D S + I G+ GL K++L    +++KE+G
Sbjct: 130 KDLLSQSNPDDLSILPIVGLPGLGKTSLARLVFEDKEEG 168


>10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334
          Length = 664

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 497 MNIAVSLVPK*NLIEVHSTLHTFRFDCRIPNVFKNDS 607
           +NIA+ L      ++ H T  TF  D +  +VF +D+
Sbjct: 477 VNIAIELASALTYLQAHDTAPTFLHDLKSSDVFLDDN 513


>04_04_1509 -
           34074206-34074398,34074506-34074777,34075411-34075608,
           34076092-34076187,34076318-34076500,34076597-34076799,
           34076887-34077013,34077098-34077292,34077400-34077540,
           34077669-34077812,34077876-34078040,34078776-34078976,
           34079049-34079195,34079275-34079427,34079731-34079833,
           34079954-34080069,34080168-34080349,34080442-34080541,
           34081200-34081527,34081605-34081834,34081979-34082110,
           34082787-34082859,34083274-34083338
          Length = 1248

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 525 FGTNETAIFIKSKLAFALEVYEF 457
           FG++ TA+F K ++A  L +++F
Sbjct: 517 FGSSNTAVFFKMRVAGVLHIFQF 539


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,115,565
Number of Sequences: 37544
Number of extensions: 218321
Number of successful extensions: 391
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)