Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00667
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF068709-17|AAC19257.2|  287|Caenorhabditis elegans Serpentine r...    28   6.3  
AC006677-1|AAF39948.1|  331|Caenorhabditis elegans Serpentine re...    28   6.3  

>Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical
           protein F02D10.6 protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 326 YELIHL*VGRYDILTLFRFYLLLPFHISLINVIKY*YAL 442
           + L+H+    Y + TL   Y+++PFHISL  + ++ Y +
Sbjct: 76  FRLLHMCYNVYILYTLG--YMIVPFHISLYFLFEFTYTV 112


>AF068709-17|AAC19257.2|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein24 protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 603 SFLKTFGILQSNLKVCNVLWTSIKFYF 523
           S   +FGI+  NL VCN++   +  +F
Sbjct: 34  SMKNSFGIITKNLAVCNIVMCGLGLFF 60


>AC006677-1|AAF39948.1|  331|Caenorhabditis elegans Serpentine
           receptor, class x protein26 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 609 SESFLKTFGILQSNLKVCNVLWTSIKFYF 523
           +ES   +FGI+  NL VCN+    +  +F
Sbjct: 32  TESMKNSFGIITKNLAVCNIGMCGLCLFF 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,286,724
Number of Sequences: 27780
Number of extensions: 226760
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)