Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00666
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0225 + 19209957-19210047,19210067-19210128,19210686-192107...    29   4.1  
02_04_0649 - 24720367-24721071                                         29   4.1  
07_03_0249 - 15816515-15816868,15817749-15817958,15818051-158182...    28   7.1  
03_05_1064 - 30058253-30058467,30058549-30058762,30058846-300589...    28   7.1  
02_05_0621 - 30417044-30417196,30417511-30417586,30418055-304181...    28   7.1  
06_01_0035 + 358669-359007,359458-359617,359723-360582                 27   9.4  

>05_04_0225 +
           19209957-19210047,19210067-19210128,19210686-19210720,
           19211859-19211938,19212276-19212359,19212575-19212683,
           19213306-19213444
          Length = 199

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 60  SSLDMETMYDDITKTLSGEDRSHANRLEGTSTVAGTKFLVIEGFTVLNY-KPIMEICDLR 236
           S L +     D+ K     D      LE    ++G + ++IE   V  + +P    CD+ 
Sbjct: 21  SDLTLLVSVTDVCKDTENADLIMRRVLEAYEILSGNQGMMIERNNVDPFDEPECASCDIF 80

Query: 237 YYFILEMGSACPAAC 281
              +L +G+ CP +C
Sbjct: 81  VNELLCIGTGCPYSC 95


>02_04_0649 - 24720367-24721071
          Length = 234

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 45  DYDVLSSLDMETMYDDITKTLSGEDRSHANRLEGTSTVAGTK 170
           D  VL++L       D+ +T+  +DR  A R EG+S   G +
Sbjct: 190 DEIVLNALGFNEFARDLKETIEAKDREDALRAEGSSVSPGVR 231


>07_03_0249 -
           15816515-15816868,15817749-15817958,15818051-15818245,
           15818318-15818393,15819982-15820021,15820155-15820283,
           15820363-15820405
          Length = 348

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 290 YDPPDVAGYFDTCVWPRHLYYRAQIEKDRCVKLLDATQQDSFE 418
           +D PDV   F     P  L+   +     C+K+ D   ++SFE
Sbjct: 31  WDDPDVCAAFMARFCPHDLFVNTKSNLGPCMKIHDLKLKESFE 73


>03_05_1064 -
           30058253-30058467,30058549-30058762,30058846-30058936,
           30059361-30059617,30059702-30059902,30059975-30060065,
           30060510-30060573,30060754-30061021,30061118-30061249
          Length = 510

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 9   AKHIKCEGLDHNDYDVLSSLDMETMYDDITKTL-SGEDRSHANRLEGTSTVAGTKFLVIE 185
           A+ ++  G D++D+D+ S+ ++ET    + +T+  GE  + A+ +  T    G  F   +
Sbjct: 135 AQGVRQLGGDYHDWDMASARELETSASSLAETIQQGELPAKASVIAPTILETGKSF-TAK 193

Query: 186 GFTVL 200
           G  VL
Sbjct: 194 GMEVL 198


>02_05_0621 -
           30417044-30417196,30417511-30417586,30418055-30418157,
           30418269-30418339,30418446-30418789,30419867-30420004,
           30420089-30420151,30420392-30420489,30421049-30421179,
           30422397-30422428
          Length = 402

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 24  CEGLDHNDYDVLSSLDMETMYDDITKTLSGEDRSHANRLEGTSTVA 161
           CE L+H+D +  S L     Y+DI + L  + ++    L G ST A
Sbjct: 129 CEFLNHDDLNSASELHKTQRYNDIMQLLGAKKKN----LSGFSTAA 170


>06_01_0035 + 358669-359007,359458-359617,359723-360582
          Length = 452

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 59  VVAGHGDHVR*HHEDLERRGQVACQPFGGNIH 154
           + +G  DH+  ++ D    G V C P GGN+H
Sbjct: 145 ISSGPNDHIFVYYSDHGSPGYV-CMPSGGNLH 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,638,481
Number of Sequences: 37544
Number of extensions: 299172
Number of successful extensions: 651
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)