Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00666
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)                   30   1.4  
SB_18845| Best HMM Match : Keratin_B2 (HMM E-Value=7)                  28   7.3  

>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
          Length = 1485

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 210  VYNLTP*NLQSPRTLYRLRWMFPPNGWHATCP 115
            +Y++    L SPR + +  W+FPP   H +CP
Sbjct: 986  IYDMQRRTLPSPRLVPKRYWLFPPPA-HCSCP 1016


>SB_18845| Best HMM Match : Keratin_B2 (HMM E-Value=7)
          Length = 130

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 405 CCVASSNFTHRSFSICAL*YKCRGHT 328
           CC   + FTH + S C L   CR H+
Sbjct: 36  CCTVRAVFTHHTRSACLLHCPCRIHS 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,683,952
Number of Sequences: 59808
Number of extensions: 337766
Number of successful extensions: 747
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)