Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00666
         (635 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060471-1|AAL25510.1|  323|Drosophila melanogaster SD05789p pro...    48   1e-05
AE014296-638|AAN11559.1|  323|Drosophila melanogaster CG12016-PB...    48   1e-05
AE014296-637|AAF47759.2|  323|Drosophila melanogaster CG12016-PA...    48   1e-05

>AY060471-1|AAL25510.1|  323|Drosophila melanogaster SD05789p
           protein.
          Length = 323

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +2

Query: 260 ECVSRRVLRLYDPPDVAGYFDTCVWPRH 343
           +C  RR  R YDPPDV GYF+ CVWP +
Sbjct: 217 KCFERRSKRTYDPPDVTGYFELCVWPHY 244



 Score = 32.7 bits (71), Expect = 0.43
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +3

Query: 171 FLVIEGFTVLNYKPIMEICDLRYYFIL 251
           FL++EGF + N   ++ +C+++Y+F L
Sbjct: 187 FLLVEGFMIFNQPELLALCNIKYHFHL 213


>AE014296-638|AAN11559.1|  323|Drosophila melanogaster CG12016-PB,
           isoform B protein.
          Length = 323

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +2

Query: 260 ECVSRRVLRLYDPPDVAGYFDTCVWPRH 343
           +C  RR  R YDPPDV GYF+ CVWP +
Sbjct: 217 KCFERRSKRTYDPPDVTGYFELCVWPHY 244



 Score = 32.7 bits (71), Expect = 0.43
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +3

Query: 171 FLVIEGFTVLNYKPIMEICDLRYYFIL 251
           FL++EGF + N   ++ +C+++Y+F L
Sbjct: 187 FLLVEGFMIFNQPELLALCNIKYHFHL 213


>AE014296-637|AAF47759.2|  323|Drosophila melanogaster CG12016-PA,
           isoform A protein.
          Length = 323

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +2

Query: 260 ECVSRRVLRLYDPPDVAGYFDTCVWPRH 343
           +C  RR  R YDPPDV GYF+ CVWP +
Sbjct: 217 KCFERRSKRTYDPPDVTGYFELCVWPHY 244



 Score = 32.7 bits (71), Expect = 0.43
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +3

Query: 171 FLVIEGFTVLNYKPIMEICDLRYYFIL 251
           FL++EGF + N   ++ +C+++Y+F L
Sbjct: 187 FLLVEGFMIFNQPELLALCNIKYHFHL 213


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,602,492
Number of Sequences: 53049
Number of extensions: 488963
Number of successful extensions: 1027
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)