Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00666
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82059-11|CAC42351.2|  591|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z82059-10|CAB04878.2|  589|Caenorhabditis elegans Hypothetical p...    30   1.2  
U55372-1|AAA98002.2|  816|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>Z82059-11|CAC42351.2|  591|Caenorhabditis elegans Hypothetical
           protein T27E9.4b protein.
          Length = 591

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 391 GRDAAGLVXXXXXXXXXXXAVSPVGHEIGGHK*MYQYNRLYVCNDFSPMRSLVSIKVFN 567
           G+D   LV            +SP+  +       +  NRLYVC  +  + SL SI++++
Sbjct: 361 GQDRLDLVEKFDYDTLKWTTLSPLTRKRSALAAAFVTNRLYVCGGYDGLHSLSSIEIYD 419


>Z82059-10|CAB04878.2|  589|Caenorhabditis elegans Hypothetical
           protein T27E9.4a protein.
          Length = 589

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 391 GRDAAGLVXXXXXXXXXXXAVSPVGHEIGGHK*MYQYNRLYVCNDFSPMRSLVSIKVFN 567
           G+D   LV            +SP+  +       +  NRLYVC  +  + SL SI++++
Sbjct: 359 GQDRLDLVEKFDYDTLKWTTLSPLTRKRSALAAAFVTNRLYVCGGYDGLHSLSSIEIYD 417


>U55372-1|AAA98002.2|  816|Caenorhabditis elegans Hypothetical
           protein C02G6.2 protein.
          Length = 816

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 302 DVAGYFDTCVWPRHLYYRAQIEKDRCVKLLD 394
           D AG ++ C  P H YY   ++ D+    LD
Sbjct: 95  DNAGSYNACTEPDHTYYHFDVKPDQLYGALD 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,785,562
Number of Sequences: 27780
Number of extensions: 242182
Number of successful extensions: 565
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)