Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00662
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    88   1e-18
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    37   0.003
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    36   0.005
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   5.2  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.2  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.9  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   9.1  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    25   9.1  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 59/165 (35%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
 Frame = +1

Query: 157 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIASSARRLYFSVV*KCPLR----STNLP 324
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YI    RR   ++  K P         L 
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 325 RHWTRLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPIPSDPAQTQSP 504
           ++      +  +++   T                       +S   + P           
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVS---KKPYNVKYGLNHVV 140

Query: 505 SCREEEGALVV-IAHDVDPIELVLFLPALCRKMGVPYWHCQGKSR 636
           +  E + A +V IA DVDPIELV+FLPALC+KMGVPY   + K+R
Sbjct: 141 ALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKAR 185



 Score = 64.9 bits (151), Expect = 9e-12
 Identities = 30/56 (53%), Positives = 39/56 (69%)
 Frame = +3

Query: 222 LVQICKMAQVYRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 389
           L +  K  +  R+QR++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET
Sbjct: 46  LSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 511 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYWHCQGK 630
           R+ E  LV++A D+ P++++  +P LC    VPY +   K
Sbjct: 66  RKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSK 105


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 532 VVIAHDVDPIELVLFLPALCRKMGVPY 612
           +V+A D +PIE++L LP LC    VPY
Sbjct: 51  IVMAADTEPIEILLHLPLLCEDKNVPY 77


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 371  LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSLLA-LDAIYLGHLTNLDK 222
            L+N ++ L  +L + L  +V++  H  TTL Y+L   L  IY   + + DK
Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTLFEHLLNIYKETINDSDK 1740


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 270 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 371
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 452 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 282
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 342 TAKGLFKILEKYR 380
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 144 QEDRESSLREEAKELCHWSGHSANS*LVQICKMAQVYRIQRQKAVLQRRL 293
           +E  E SL+EE ++ C W  H     +  +   A++ ++ R+   L  RL
Sbjct: 115 KERLEVSLKEEHQDNCLWRLHKFPPDIYHLSVSAELVQVGRRFNSLSTRL 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,383,314
Number of Sequences: 5004
Number of extensions: 44239
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)