Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00662
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 89 4e-18
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 78 7e-15
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 61 6e-10
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 35 0.062
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 34 0.082
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 32 0.44
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 32 0.44
07_03_1422 + 26462871-26463434,26463772-26463897 31 0.77
07_03_1414 - 26403361-26403969 31 0.77
07_03_1413 - 26396426-26396890 31 0.77
04_04_0188 - 23433753-23436572 29 3.1
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 28 5.4
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 5.4
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 28 5.4
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099... 28 7.1
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 88.6 bits (210), Expect = 4e-18
Identities = 59/162 (36%), Positives = 74/162 (45%), Gaps = 2/162 (1%)
Frame = +1
Query: 157 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIASSARRLYFSVV*KCPLRSTNLPRHWT 336
NPLFEKRPK F IG + P +DL RFV+WPK + +R K P R
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 337 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPIPSDPAQTQSPSCR 513
+ L F + ++ + PI
Sbjct: 82 KNLATNLFKMLLK--YRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI 139
Query: 514 EEEGA-LVVIAHDVDPIELVLFLPALCRKMGVPYWHCQGKSR 636
E+ A LVVIAHDVDPIELV++LPALCRKM VPY +GK+R
Sbjct: 140 EQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKAR 181
Score = 70.9 bits (166), Expect = 8e-13
Identities = 33/55 (60%), Positives = 42/55 (76%)
Frame = +3
Query: 222 LVQICKMAQVYRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 386
L + K +V RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 98
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 77.8 bits (183), Expect = 7e-15
Identities = 53/152 (34%), Positives = 67/152 (44%), Gaps = 2/152 (1%)
Frame = +1
Query: 157 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIASSARRLYFSVV*KCPLRSTNLPRHWT 336
NPLFEKRPK F IG + P +DL RFV+WPK + +R K P R
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 337 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPIPSDPAQTQSPSCR 513
+ L F + ++ + PI
Sbjct: 66 KNLATNLFKMLLK--YRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI 123
Query: 514 EEEGA-LVVIAHDVDPIELVLFLPALCRKMGV 606
E+ A LVVIAHDVDPIELV++LPALCRKM +
Sbjct: 124 EQSKAQLVVIAHDVDPIELVVWLPALCRKMEI 155
Score = 70.9 bits (166), Expect = 8e-13
Identities = 33/55 (60%), Positives = 42/55 (76%)
Frame = +3
Query: 222 LVQICKMAQVYRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 386
L + K +V RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 82
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/41 (65%), Positives = 34/41 (82%)
Frame = +1
Query: 514 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYWHCQGKSR 636
+ + LVVIAHDVDPIELV++LPALCRKM +PY +GK+R
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKAR 166
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = +1
Query: 157 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIASSARR 273
NPLFEKRPK F IG + P +DL RFVRWPK + +R
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQR 61
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/55 (43%), Positives = 37/55 (67%)
Frame = +3
Query: 222 LVQICKMAQVYRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 386
L + + + RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 45 LHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 34.7 bits (76), Expect = 0.062
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 505 SCREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYWHCQGK 630
S R + L +IA ++ PI+++ +P LC + +PY + K
Sbjct: 55 SIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSK 96
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 34.3 bits (75), Expect = 0.082
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 505 SCREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYWHCQGK 630
S R L VIA ++ PI+++ +P LC + +PY + K
Sbjct: 55 SIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSK 96
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 532 VVIAHDVDPIELVLFLPALCRKMGVPY 612
VV+A D +P+E++L LP L VPY
Sbjct: 52 VVMAADAEPLEILLHLPLLAEDKNVPY 78
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 532 VVIAHDVDPIELVLFLPALCRKMGVPY 612
VV+A D +P+E++L LP L VPY
Sbjct: 54 VVMAADTEPLEILLHLPLLAEDKNVPY 80
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -1
Query: 285 AEVQPSGAGCDILGPSYKSGQVTSWLNALTNGKVLWPLLEERIHDLLGLNLFD 127
A +P+ + P Y G+V + + +T G+ L P LEE GL L D
Sbjct: 68 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1414 - 26403361-26403969
Length = 202
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -1
Query: 285 AEVQPSGAGCDILGPSYKSGQVTSWLNALTNGKVLWPLLEERIHDLLGLNLFD 127
A +P+ + P + G++ + + +T G+ L P LEE + GL L+D
Sbjct: 70 AATKPTALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>07_03_1413 - 26396426-26396890
Length = 154
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -1
Query: 285 AEVQPSGAGCDILGPSYKSGQVTSWLNALTNGKVLWPLLEERIHDLLGLNLFD 127
A +P+ + P Y G+V + + +T G+ L P LEE GL L D
Sbjct: 22 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
>04_04_0188 - 23433753-23436572
Length = 939
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 207 SANS*LVQICKMAQVYRIQRQKAVLQRRLKVPPPINQFTQTLD 335
SA + L Q+CK + RQ A R + PPP + + LD
Sbjct: 21 SAGASLRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWVLD 63
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 260 PAPEGCTSASSESAPSDQP 316
PAPE +A+ E+APSD P
Sbjct: 55 PAPEEAPAAAEEAAPSDDP 73
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 202 PDQWQSSLASSRREDSRSSWAQPF*PPMGRR 110
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 261 GCDILGPSYKSGQVTSWLNALTNG 190
G ++ PS KSG++TS L +TNG
Sbjct: 86 GLPLVSPSSKSGKLTSKLRQVTNG 109
>01_06_1486 -
37709159-37709377,37709558-37709821,37709903-37709995,
37710387-37710581,37710665-37710763,37710884-37711132,
37711264-37711467,37711543-37711602,37711731-37711913,
37712382-37712999,37713101-37713169,37713275-37713853
Length = 943
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 463 RGPIPSDPAQTQSPSCREEEGALVVI 540
R P P+ P QT S S REEE +L +
Sbjct: 135 RSPTPAAPPQTASVSQREEEKSLASV 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,674,064
Number of Sequences: 37544
Number of extensions: 336163
Number of successful extensions: 1021
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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