Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00662
(636 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 1e-19
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 60 1e-09
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 36 0.028
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 35 0.048
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 5.5
SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25) 28 5.5
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 9.7
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 93.5 bits (222), Expect = 1e-19
Identities = 59/161 (36%), Positives = 74/161 (45%), Gaps = 1/161 (0%)
Frame = +1
Query: 157 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIASSARRLYFSVV*KCPLRSTNLPRHWT 336
NPL EKRP+NF IG IQP RDLSRFVRWP+Y+ ++ K P +
Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88
Query: 337 RLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPIPSDPAQTQSPSCRE 516
R + + P+ S E
Sbjct: 89 RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148
Query: 517 EEGA-LVVIAHDVDPIELVLFLPALCRKMGVPYWHCQGKSR 636
+ A LVVIAHDVDPIE+V++LPALCRKM VPY +GK+R
Sbjct: 149 NKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKAR 189
Score = 68.9 bits (161), Expect = 3e-12
Identities = 35/96 (36%), Positives = 50/96 (52%)
Frame = +3
Query: 222 LVQICKMAQVYRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 401
L + + + ++QRQK++L +RLKVPP INQFTQ LD+ + LFK+L KYRPET
Sbjct: 51 LSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEK 110
Query: 402 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKL 509
+P ++ G N +T L
Sbjct: 111 KARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSL 146
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/40 (67%), Positives = 34/40 (85%)
Frame = +1
Query: 517 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYWHCQGKSR 636
++ LVVIAHDVDPIE+V++LPALCRKM VPY +GK+R
Sbjct: 59 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKAR 98
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = +3
Query: 354 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKL 509
LFK+L KYRPET +P ++ G N +T L
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSL 55
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 35.9 bits (79), Expect = 0.028
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 532 VVIAHDVDPIELVLFLPALCRKMGVPYWHCQGKS 633
+V+A D +P+E++L LP LC VPY + K+
Sbjct: 113 IVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKA 146
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 35.1 bits (77), Expect = 0.048
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 511 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYWHCQGK 630
R+ E V++A DV PI+++ +P +C +PY + K
Sbjct: 111 RKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 467 PLWWRLIFLGNLSFSSFPQPLFPG 396
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
>SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25)
Length = 305
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +2
Query: 515 KKKAHLWSSLMMLIPLSWSFSCQRYAVKWAYHTGIVRASP 634
+K + +W SL+ ++ L W A +W +ASP
Sbjct: 61 RKLSKMWKSLLKVVDLPWDTPAATTAPEWIMGPSFPQASP 100
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 278 TSASSESAPSDQPIYPDTG 334
T+ASSE+APS P PD G
Sbjct: 43 TAASSEAAPSSAPSMPDYG 61
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 175 RPKNFAIGQGIQPTRDLSRFVRWPKYIASSARRLY 279
RP + IG G P R++ W +Y A+ RL+
Sbjct: 2071 RPTSCGIGNGRLPNRNIKASSEWDRYHAAWLARLH 2105
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 175 RPKNFAIGQGIQPTRDLSRFVRWPKYIASSARRLY 279
RP + IG G P R++ W +Y A+ RL+
Sbjct: 3259 RPTSCGIGNGRLPNRNIKASSEWDRYHAAWLARLH 3293
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,348,751
Number of Sequences: 59808
Number of extensions: 351732
Number of successful extensions: 981
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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