Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00662
(636 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 84 7e-17
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 69 2e-12
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 66 2e-11
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 60 1e-09
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 37 0.014
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.024
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 32 0.40
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 32 0.40
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 31 0.91
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ... 29 2.8
AF003130-9|AAP68939.1| 307|Caenorhabditis elegans Hypothetical ... 29 3.7
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 6.4
U23449-6|AAC24300.2| 937|Caenorhabditis elegans Hypothetical pr... 28 6.4
U67950-3|AAK84565.1| 138|Caenorhabditis elegans Hypothetical pr... 27 8.5
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 84.2 bits (199), Expect = 7e-17
Identities = 54/160 (33%), Positives = 70/160 (43%), Gaps = 1/160 (0%)
Frame = +1
Query: 157 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIASSARRLYFSVV*KCPLRSTNLPRHWT 336
NPLFEKR +NF IGQ IQP +D++RFV+WPKYI + K P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 337 RLQLR-AFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPIPSDPAQTQSPSCR 513
R AF + + +R T +
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
Query: 514 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYWHCQGKS 633
LV+IAHDV+P+E+VL LPALCRK VPY +GK+
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKA 189
Score = 81.0 bits (191), Expect = 7e-16
Identities = 39/96 (40%), Positives = 53/96 (55%)
Frame = +3
Query: 222 LVQICKMAQVYRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 401
+ + K + R+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAK 111
Query: 402 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKL 509
RPNT+R G NT+T+L
Sbjct: 112 KNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRL 147
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 69.3 bits (162), Expect = 2e-12
Identities = 39/96 (40%), Positives = 53/96 (55%)
Frame = +3
Query: 222 LVQICKMAQVYRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 401
+ + K + R+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES---- 107
Query: 402 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKL 509
RPNT+R G NT+T+L
Sbjct: 108 ----------------TEVTKRPNTVRHGVNTITRL 127
Score = 60.1 bits (139), Expect = 1e-09
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = +1
Query: 157 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYI 255
NPLFEKR +NF IGQ IQP +D++RFV+WPKYI
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYI 62
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +1
Query: 529 LVVIAHDVDPIELVLFLPALCRKMGVPYWHCQGKS 633
LV+IAHDV+P+E+VL LPALCRK VPY +GK+
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKA 169
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/56 (51%), Positives = 40/56 (71%)
Frame = +3
Query: 222 LVQICKMAQVYRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 389
+ + K + R+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
Score = 60.1 bits (139), Expect = 1e-09
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = +1
Query: 157 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYI 255
NPLFEKR +NF IGQ IQP +D++RFV+WPKYI
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYI 165
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 60.1 bits (139), Expect = 1e-09
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = +1
Query: 157 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYI 255
NPLFEKR +NF IGQ IQP +D++RFV+WPKYI
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYI 165
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +3
Query: 222 LVQICKMAQVYRIQRQKAVLQRRLKVPPPINQFTQTLD 335
+ + K + R+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 36.7 bits (81), Expect = 0.014
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 529 LVVIAHDVDPIELVLFLPALCRKMGVPYWHCQGKS 633
++V+A D +P+E++L LP LC VPY + K+
Sbjct: 53 IIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKA 87
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.024
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -2
Query: 431 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 312
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 469 PIPSDPAQTQSPSCREEEGALVVIAHDVDPIELVLFLP 582
P PS+P T P+ + E +++ AHD DP++ + P
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAP 489
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 469 PIPSDPAQTQSPSCREEEGALVVIAHDVDPIELVLFLP 582
P PS+P T P+ + E +++ AHD DP++ + P
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAP 489
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 30.7 bits (66), Expect = 0.91
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 511 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPY 612
R E + ++A +V PI++ +P +C + +PY
Sbjct: 81 RRNEKGICILAGNVSPIDVYSHIPGICEEKEIPY 114
>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
protein ZC123.3 protein.
Length = 1623
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 208 QPTRDLSRFVRWPKYIASSARRLYFSVV*KCPLRSTNLPRHWTRL 342
Q +R +R RW + S RR+ FS C RST+ PR RL
Sbjct: 441 QNSRIAARGARWRSEASRSCRRIPFST---CSTRSTSAPRVAIRL 482
>AF003130-9|AAP68939.1| 307|Caenorhabditis elegans Hypothetical
protein F55A12.2c protein.
Length = 307
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +2
Query: 452 ASTKEAQYHPIRHKHSHQAVEKKKAHLWSSLMMLIPLSWSFSCQRYAVKWAYHTGIV 622
A+ ++A P Q + + + LM + +W F +R A+ W H G+V
Sbjct: 36 AAARDASTDPSNRSTLWQNLSSMSSADQAHLMSRLSSTWPFRDERRALTWPVHAGLV 92
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 304 LRSTNLPRHWTRLQLRA 354
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>U23449-6|AAC24300.2| 937|Caenorhabditis elegans Hypothetical
protein K06A1.6 protein.
Length = 937
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 476 HPIRHKHSHQAVEKKKAHLWSS 541
HP +HK SH+ K LWSS
Sbjct: 392 HPRKHKKSHRQFVVKPTDLWSS 413
>U67950-3|AAK84565.1| 138|Caenorhabditis elegans Hypothetical
protein T01B6.4 protein.
Length = 138
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 244 AILQIWTSHELAECPDQWQSSLASSRREDSRSSWAQPF*PP 122
AI+ + S+ E P+QW+ S+ ED SW + PP
Sbjct: 12 AIIVVNASYRATESPEQWRQRFLKSQSED--PSWLRFPTPP 50
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,391,642
Number of Sequences: 27780
Number of extensions: 257031
Number of successful extensions: 761
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -