Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00662
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    70   1e-12
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            70   1e-12
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45...    39   0.002
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45...    32   0.37 
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45...    32   0.37 
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45...    32   0.37 
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45...    31   0.48 
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    29   3.4  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   7.9  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 33/55 (60%), Positives = 41/55 (74%)
 Frame = +3

Query: 222 LVQICKMAQVYRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 386
           L +  K  +  R+QRQK +L++RLKVPP +NQFT+TLDK  A  LFKIL KYRPE
Sbjct: 42  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE 96



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 29/41 (70%), Positives = 34/41 (82%)
 Frame = +1

Query: 514 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYWHCQGKSR 636
           + +  LVVIAHDVDPIELV++LPALCRKM VPY   +GKSR
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSR 179



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +1

Query: 157 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYI 255
           NPLFE+RPK F IG  + P +DLSR+++WPK I
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSI 52


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 32/55 (58%), Positives = 41/55 (74%)
 Frame = +3

Query: 222 LVQICKMAQVYRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 386
           L +  K  +  R+QRQK +L++RLKVPP +NQFT+TLDK  A  LFK+L KYRPE
Sbjct: 43  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE 97



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 29/41 (70%), Positives = 34/41 (82%)
 Frame = +1

Query: 514 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYWHCQGKSR 636
           + +  LVVIAHDVDPIELV++LPALCRKM VPY   +GKSR
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSR 180



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +1

Query: 157 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYI 255
           NPLFE+RPK F IG  + P +DLSR+++WPK I
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSI 53


>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 156

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +1

Query: 505 SCREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYWHCQGK 630
           S R  +  L VIA ++ PI+++  LP LC + GVPY +   K
Sbjct: 61  SIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSK 102


>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 160

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 532 VVIAHDVDPIELVLFLPALCRKMGVPY 612
           VV+A D +P+E++L LP L     VPY
Sbjct: 86  VVMAADAEPLEILLHLPLLAEDKNVPY 112


>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 532 VVIAHDVDPIELVLFLPALCRKMGVPY 612
           VV+A D +P+E++L LP L     VPY
Sbjct: 54  VVMAADAEPLEILLHLPLLAEDKNVPY 80


>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 532 VVIAHDVDPIELVLFLPALCRKMGVPY 612
           VV+A D +P+E++L LP L     VPY
Sbjct: 54  VVMAADAEPLEILLHLPLLAEDKNVPY 80


>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 532 VVIAHDVDPIELVLFLPALCRKMGVPY 612
           +V+A D +P+E++L LP L     VPY
Sbjct: 54  IVMAADTEPLEILLHLPLLAEDKNVPY 80


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -2

Query: 482  SDGIGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 324
            + G+ P+  R +F   +  +S  QP  P CF L P  L  LE + +CS++  +
Sbjct: 971  NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 443 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 348
           L N S S  P+P+FPGC  +R +  + +  ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,923,414
Number of Sequences: 28952
Number of extensions: 250795
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)