Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00660
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    68   2e-12
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    33   0.047
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    33   0.062
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom...    31   0.19 
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   3.1  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   3.1  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    27   3.1  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   3.1  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    27   4.1  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        27   4.1  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    27   4.1  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   7.1  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   9.4  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 31/69 (44%), Positives = 44/69 (63%)
 Frame = +2

Query: 47  LDSLFNKAADHLRKITNKLDNGQLLELYGLFKQGTEGQCNTPKPGWLDGKGRRKWEAWKN 226
           + S F +AA  ++++    ++ +LL+LY LFKQ T G  NT KPG LD KG+ KW AW+ 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNNTEKPGLLDLKGKFKWNAWEE 60

Query: 227 LKDMPSEEA 253
           LK    E+A
Sbjct: 61  LKGKSKEDA 69


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +3

Query: 513 AADRNAINALSAALSGGCPIDAVDECGQTALHYAVSCGHVESTKILDE 656
           AA     + +   L  G   +A DE G T +H AVS GH +  KIL E
Sbjct: 11  AASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVE 58


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 579 VDECGQTALHYAVSCGHVESTKIL 650
           +D+ G T+LH+A S GH+E  K+L
Sbjct: 244 IDDDGHTSLHWACSMGHIEMIKLL 267


>SPBP16F5.05c |||ribosome biogenesis protein
           Nop8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 570 IDAVDECGQTALHYAVSCGHVESTKILDES 659
           I+A +E G TA+H+A   GH E  K+L E+
Sbjct: 64  INAQNESGNTAMHWAALNGHAEICKLLLEA 93


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 579 VDECGQTALHYAVSCGHVE 635
           +DE G TALH+A + G++E
Sbjct: 233 IDEDGHTALHWAAAMGNLE 251


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 534 NALSAALSGGCPIDAVDECGQTALHYAVSCGH 629
           NA +   + GC ++  D  G T LHYA    H
Sbjct: 876 NASTFLCNAGCDVNKRDALGYTPLHYASLYDH 907


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 29  DEDQSPLDSLFNKAADHLRKITNKLDNG 112
           DED   +D+ +   ADH+R +T  + +G
Sbjct: 290 DEDVDGIDTAYRVVADHVRTLTFAISDG 317


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -1

Query: 337 FPWYQYLSFEVYLTSQDHIFSTKQYISPSLFTGHIFKILPGLPFPTSFTI 188
           + W       V+L +  +I     +I   L   ++F    GLPFP++F +
Sbjct: 124 YTWLDNNRKPVHLPAPQYIEYVLAWIENRLHDQNVFPTKAGLPFPSNFLV 173


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 271 LLKKYDPDWSGTPQKTNIDT-KETWVAVSSMRYSPEPDLVHNE 396
           ++++YDPD++G   K +I    E    V ++R +PE  L+ NE
Sbjct: 10  IVRQYDPDYTG---KVSIQAFLEIVDDVDALRLNPEAPLLDNE 49


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 513 AADRNAINALSAALSGGCPIDAVDECGQTALHYAVSCGH 629
           AA    I  +   +S   P++  D  G T LH+A++ GH
Sbjct: 148 AAAVGKIQVVKYLISQRAPLNTSDSYGFTPLHFALAEGH 186


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 534 NALSAALSGGCPIDA-VDECGQTALHYAVS 620
           +AL A LS    +D  +DE G  ALH+A +
Sbjct: 337 SALEAKLSDSLDLDVPIDELGHAALHWAAA 366


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
 Frame = +1

Query: 370 PEPDLVHNELSLLDAAREDCGERVKEL---LIKKPELK----YEKDEDGLTALPGLLTEM 528
           P P+ V N+L  L     + GERV  L   L  KP  +     EKD   +T L   L E+
Sbjct: 317 PTPEAVSNKLVFLQNTNANLGERVSSLESQLSNKPANQPLGANEKDAAHITELETKLKEL 376


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -1

Query: 154 FSTLLEQPVQLQKLTIV*FI----CNLSKMVSCFIEQAVQWRLI 35
           F  L   P+ +Q+ TI  FI    CN   M  C IE+ + WR +
Sbjct: 326 FFYLDSNPLSIQR-TITHFIKKLVCNECSMHPCDIEEIIAWRTL 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,076
Number of Sequences: 5004
Number of extensions: 68050
Number of successful extensions: 190
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)