Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00660
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   2.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.5  

>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
 Frame = +2

Query: 107 NGQLLELYGLFKQGTEGQCNT--PKPGWLDGKGRRKWEAWKNLKDMPSEEARRNILLC*K 280
           N Q+L L+ L    T   C T     GW +GK     E   N   + S+    N  L   
Sbjct: 3   NSQILILFILSLTITIVMCQTFTYSHGWTNGKRSTSLEELANRNAIQSDNVFANCELQKL 62

Query: 281 NMILTGQVH 307
            ++L G ++
Sbjct: 63  RLLLQGNIN 71


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +2

Query: 113 QLLELYGLFKQGTEGQCNTPKPGWLDGKGRRKWEAWKNLKDMPSEEARRNI 265
           Q+ +   L +QG   Q + P  G   G+G   W++  +  D P      N+
Sbjct: 191 QITQSQYLLQQGLGLQGHNPSSGLQPGEGLPMWKS--DTSDGPESHQNSNV 239


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 498 HCTTWAADRNAINALSAALSGGC 566
           H   ++A  N + ALS+  S GC
Sbjct: 174 HDPEYSARENELRALSSLFSKGC 196



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 298 SGTPQKTNIDTKETWVAVSSMRYSPEPDLVH 390
           SG    T ++        +S  YS  PDL+H
Sbjct: 639 SGAKSPTVLEELTHGTLAASTLYSKRPDLLH 669


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 498 HCTTWAADRNAINALSAALSGGC 566
           H   ++A  N + ALS+  S GC
Sbjct: 174 HDPEYSARENELRALSSLFSKGC 196



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 298 SGTPQKTNIDTKETWVAVSSMRYSPEPDLVH 390
           SG    T ++        +S  YS  PDL+H
Sbjct: 639 SGAKSPTVLEELTHGTLAASTLYSKRPDLLH 669


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 498 HCTTWAADRNAINALSAALSGGC 566
           H   ++A  N + ALS+  S GC
Sbjct: 174 HDPEYSARENELRALSSLFSKGC 196



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 298 SGTPQKTNIDTKETWVAVSSMRYSPEPDLVH 390
           SG    T ++        +S  YS  PDL+H
Sbjct: 639 SGAKSPTVLEELTHGTLAASTLYSKRPDLLH 669


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,138
Number of Sequences: 438
Number of extensions: 4194
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)