Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00659
         (734 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q638B1 Cluster: Group-specific protein; n=3; Bacillus c...    33   5.5  
UniRef50_Q9XHX8 Cluster: OSJNBa0049B20.15 protein; n=3; Oryza sa...    33   9.6  

>UniRef50_Q638B1 Cluster: Group-specific protein; n=3; Bacillus
           cereus group|Rep: Group-specific protein - Bacillus
           cereus (strain ZK / E33L)
          Length = 235

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -1

Query: 557 VLSKSNINVYLYINM*RKTLYPFLRKLRERRSMK--FPTQIENIEKECRML 411
           V S+ NI +Y+YI +   TL+ FLR  + RR+ K     +IEN +K   M+
Sbjct: 102 VASEKNIIIYVYITIIIITLFIFLRIYKSRRNKKRLLQDKIENKKKPSEMV 152


>UniRef50_Q9XHX8 Cluster: OSJNBa0049B20.15 protein; n=3; Oryza
           sativa|Rep: OSJNBa0049B20.15 protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 338

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 351 CNVFFFIDLMYFLGII*KIY*HSALLLYILYLCGKFHTPPFAQFS*KGIQSFSSH 515
           C + FF+ L  F  ++ K+  HS  L +    C    TP     S  GI+S  SH
Sbjct: 273 CKMLFFLSLFLFASLVIKLALHSKSLAFTPLYCICTQTPRMNVMSQHGIRSKPSH 327


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,039,358
Number of Sequences: 1657284
Number of extensions: 10260883
Number of successful extensions: 20335
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20314
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)