Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00659
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1058 - 34147025-34147069,34147190-34147339,34147983-341481...    28   8.8  

>01_06_1058 -
           34147025-34147069,34147190-34147339,34147983-34148117,
           34148391-34148449,34149142-34149258,34149448-34149625,
           34149715-34149798,34150133-34150201,34150385-34150525,
           34150781-34150873,34151338-34151466,34152033-34152371,
           34152624-34152674
          Length = 529

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 355 LHTLPCI*RTHACILFVYCQTFALDVCGQI 266
           ++ LP I   H C L ++C+T  +DV GQ+
Sbjct: 4   VYRLPLI---HECGLVMFCRTLKIDVLGQV 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,288,898
Number of Sequences: 37544
Number of extensions: 234077
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)