Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00659
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)                  29   3.9  
SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_11851| Best HMM Match : IncFII_repA (HMM E-Value=1.4)               28   6.8  
SB_57002| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)
          Length = 453

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 316 ILFVYCQTFALDVCGQIEN--RLKYCLSLLIFFY 221
           +L   CQ + LDVC    N  R  YC +L I+ Y
Sbjct: 9   LLAAGCQPWNLDVCSASSNGERFAYCATLAIYVY 42


>SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 887

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = -3

Query: 684 IQSFP*SYHVNNVISVLPLQNST 616
           I++FP ++ +NN+++VL +QN T
Sbjct: 68  IEAFPVNFFINNMLTVLAVQNPT 90


>SB_11851| Best HMM Match : IncFII_repA (HMM E-Value=1.4)
          Length = 401

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
 Frame = -3

Query: 567 TILGTK*IKYKCLSIY*YVKKNFVSLFTKIARTEEYEISHTDREYREGVPNANIF----F 400
           T+ GT+ +   C  +  +VKK F+S    I    ++ I+  ++ Y++ +   N F    F
Sbjct: 3   TLRGTQHVHNTCAYVIDHVKKKFLSK-PWITTGIKHSIAIKNKLYKQFLNTQNSFIHNQF 61

Query: 399 KLC---LKNTLNQ*KKKHYTHYHVFDAH 325
           KL    LK  L   K+K+Y  Y  F AH
Sbjct: 62  KLYRNKLKRLLMASKEKYYEDY--FSAH 87


>SB_57002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 455 ISYSSVRAIFVKRDTKFF---FTY*YIDKHLYLIYLVPNIVLFSDCKSS 592
           ISY +++ I  +R T FF     + Y+   +Y ++LVP I      K++
Sbjct: 60  ISYRNLKKIHQERSTNFFNDELAFAYLAWFVYCLHLVPQIATLFRLKAN 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,965,508
Number of Sequences: 59808
Number of extensions: 326026
Number of successful extensions: 534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)