Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00659
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024785-6|AAF60605.2|  467|Caenorhabditis elegans C-type lectin...    30   1.5  
AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical p...    29   3.4  
AF078780-4|AAC26912.1|  332|Caenorhabditis elegans Serpentine re...    28   6.0  
Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AC024785-6|AAF60605.2|  467|Caenorhabditis elegans C-type lectin
           protein 74 protein.
          Length = 467

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +2

Query: 389 RHNLKNILAFGTPS--LYSLSVWEISYSSVRAIFVKRDTKFFFTY*YI-DKHLYLIYLV 556
           RH + N LA  TPS    S  ++++S  +     + RDT F  T  YI  +  Y IY V
Sbjct: 293 RHGMVNFLASNTPSGGTQSRVLYDLSSQTNGVYAITRDTSFSSTIDYIPTRERYPIYAV 351


>AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical
           protein T22B2.3 protein.
          Length = 385

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 457 FILLRSRNFRKK-GYKVFLHILIYR*TFIFDLLST*YCIVFRLQIIYFFKLNFVSTVL 627
           F L R   FR    Y  F+  L  +   IFD LS  +CI+     +Y    N+V +V+
Sbjct: 317 FFLCRVGIFRTSYNYSCFIDFLRSQLPSIFDFLSIFFCIIRIFLEVYHTNKNYVESVI 374


>Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.13 protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 542 NINVYLYINM*RKTLY-PFLRKLRERRSMKFPTQIENIEKECRMLIY 405
           NI + LY++  RK +  P ++KLR R+S      I++I     +LIY
Sbjct: 184 NIGIILYLSKRRKKMENPAMKKLRTRQSHDRTLLIQSIAATIFLLIY 230


>AF078780-4|AAC26912.1|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein229 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 235 LIFFYSVVLAKFVIIEV**VFENRIIICSVRTYN 134
           ++ +  +VL  FV++ +   +ENR  I S RT N
Sbjct: 94  ILIYVDLVLIAFVVMSIISAYENRYYILSARTRN 127


>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 419 GTPSLYSLSVWEISYSSVRAIFV 487
           GTP +Y     +I YS+ RAIFV
Sbjct: 171 GTPQIYPRLPCQIEYSTARAIFV 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,103,784
Number of Sequences: 27780
Number of extensions: 269420
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)