Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00658
(529 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch... 31 0.14
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 28 0.99
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.3
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 26 4.0
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 25 5.3
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 7.0
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.0
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 25 7.0
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.2
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch... 25 9.2
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ... 25 9.2
>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 30.7 bits (66), Expect = 0.14
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 249 PNPDPNESQESAVDNADAESTKSEGTVGSTDSDVPLKPTNELDKRVQLVT 398
PN + NE+ D+ DAE +K+EG G + + T LD R+ L T
Sbjct: 27 PNAN-NEATNETADSGDAEVSKNEGVSGIVPTLQNIVATVNLDCRLDLKT 75
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 27.9 bits (59), Expect = 0.99
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 127 LENEIAMEERDSGLDSAMSSAAWQFRDSSPEPDKTLVENSAPTQIQMKAKSQRWTTPTPK 306
+E+++A+EE D A + A + + S K E +AP I+ + TT TPK
Sbjct: 118 VEDQLALEEADKEAKKAKTEAPVEAANKSLRSRKKTPEIAAPANIEPEVAP---TTKTPK 174
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 255 PDPNESQESAVDNADAESTKSEGTVGSTDSDVPLKPTNEL 374
PD N+ E V E +K E D+++ L P N +
Sbjct: 56 PDENKVNELDVHKQSTEFSKQESASNDDDTNIQLIPENNM 95
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 186 RCLAVQRQLARTRQNSG*KFGPNPDPNESQESAVDNADAESTKSE 320
R LA++ + +N + P+ DP E++ VDN + + K E
Sbjct: 172 RVLALRAISSVDEENRKERLSPDSDPVETESVYVDNGELSNQKVE 216
>SPCC16C4.17 |mug123||meiotically upregulated gene
Mug123|Schizosaccharomyces pombe|chr 3|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 187 AAWQFRDSSPEPDKTLVENSAPTQIQMKAKSQRWTTPTPKAPSLRG 324
+A + +D + N+APT I M S+ +T + APS+ G
Sbjct: 119 SATEGKDDDEDELVISTSNTAPTYISMIESSRASSTHSGTAPSIMG 164
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +1
Query: 100 NIEPPGLVQLENEIAMEERDSGLDSAMSSAAWQFRDSS 213
N E LV LEN A DSG+ SA + DSS
Sbjct: 1638 NEEQASLVFLENSEAELPLDSGIVSAEDDKVITYEDSS 1675
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 28 LVLHNQPRQVILCLLEVAR 84
+ +HNQ R V CLLEV R
Sbjct: 360 MAVHNQLRTVKRCLLEVQR 378
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 467 DLLHFEQLGTLPGVTAAAAFHQPRHELHS 381
DLLHF T T A FHQ ++ S
Sbjct: 217 DLLHFRPSSTYGFCTQIAVFHQSKNNAAS 245
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 381 SYRVHWWV*AAHRSQCCPPSPQT 313
S R W + + H QC PPS +T
Sbjct: 345 STRSTWGIGSEHDMQCLPPSYET 367
>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 24.6 bits (51), Expect = 9.2
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Frame = -3
Query: 500 IPSCDVVASFSDLLHFEQLGTLPGVTAAAAFHQPRHELHSLIEFIGGFERHI--GVSAAH 327
I +C+ ++ F +LL ++G + ++ LH L+E F I + A
Sbjct: 141 ICACEAISDFEELLGNMRIGLIIDISLLGMNSNESSFLHYLVEVWSIFYLEILPYIEATF 200
Query: 326 RPLRLGAFGVGVVHR*LLAFIWIWVGAEFSTRVLS 222
P+ F + + + W+ A ++ S
Sbjct: 201 LPVTFAKFEIAQLFEEPMKTYWLKKSANIDLKLFS 235
>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3
Query: 395 HELHSLIEFIGG 360
HELHS+ FIGG
Sbjct: 454 HELHSISSFIGG 465
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,884
Number of Sequences: 5004
Number of extensions: 45022
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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