Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00658
(529 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04560.1 68416.m00484 expressed protein 31 0.48
At2g43090.1 68415.m05348 aconitase C-terminal domain-containing ... 30 1.1
At4g29310.1 68417.m04190 expressed protein 29 1.5
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 29 2.6
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 29 2.6
At1g16540.1 68414.m01981 molybdenum cofactor sulfurase (LOS5) (A... 29 2.6
At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family... 28 4.5
At3g12440.1 68416.m01549 extensin family protein contains simila... 28 4.5
At2g40070.1 68415.m04923 expressed protein 28 4.5
At1g13300.1 68414.m01544 myb family transcription factor contain... 28 4.5
At1g12270.1 68414.m01419 stress-inducible protein, putative simi... 28 4.5
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 27 5.9
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER... 27 5.9
At5g67620.1 68418.m08526 expressed protein 27 7.8
At4g02970.1 68417.m00404 ubiquitin family protein contains INTER... 27 7.8
At3g54810.2 68416.m06066 zinc finger (GATA type) family protein ... 27 7.8
At3g54810.1 68416.m06065 zinc finger (GATA type) family protein ... 27 7.8
At3g48470.1 68416.m05291 expressed protein 27 7.8
At3g46570.1 68416.m05055 glycosyl hydrolase family 17 protein si... 27 7.8
At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containi... 27 7.8
>At3g04560.1 68416.m00484 expressed protein
Length = 417
Score = 31.1 bits (67), Expect = 0.48
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 181 SSAAWQFRDSSPEPDKTLVENSAPTQIQMKAKSQRWTTPTPKAPSLRGRWAALTPMCRSN 360
SS+ Q SP PD++ +E S+P I + + + + P AP+L + + RS
Sbjct: 13 SSSQQQELPISPIPDESKIETSSPAPILVLKSALKRSKPEESAPNLSAPPVLKSALKRSK 72
Query: 361 P 363
P
Sbjct: 73 P 73
>At2g43090.1 68415.m05348 aconitase C-terminal domain-containing
protein contains Pfam profile PF00694: Aconitase
C-terminal domain
Length = 251
Score = 29.9 bits (64), Expect = 1.1
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = -3
Query: 527 GDPSITDEDIPSCDVVASFSDLLHFEQLGT--LPGVTAA--AAFHQPRHELHSLIEFIGG 360
GD TD+ IP+ + S+ +E+LG+ L G+ A+ F QP IGG
Sbjct: 78 GDNIDTDQIIPAEFLTLVPSNPEEYEKLGSYALVGLPASYKERFVQPGEMKTKYSIIIGG 137
Query: 359 FERHIGVSAAHRPLRLGAFGVGVV 288
G S H P+ LGA G V
Sbjct: 138 ENFGCGSSREHAPVCLGAAGAKAV 161
>At4g29310.1 68417.m04190 expressed protein
Length = 424
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 86 WPPSST*SRRGWY-S*RTRSRWKSATPASTRPCLALPGSSETARPNPTKLWLKIRP 250
W R+GW + S A + P +A PGS +R NP WL +RP
Sbjct: 224 WEKKQARERKGWMITIHDLSGSPVAAASMITPFVASPGSDRVSRSNP-GAWLILRP 278
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 243 FGPNPDPNESQESAVDNADAESTKSEGTVGSTDSDVP 353
+G D + ++ESA D+ +ES K + V TDS+ P
Sbjct: 232 YGTVEDEDANEESANDSKTSESAKGDDGVKVTDSNGP 268
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 243 FGPNPDPNESQESAVDNADAESTKSEGTVGSTDSDVP 353
+G D + ++ESA D+ +ES K + V TDS+ P
Sbjct: 232 YGTVEDEDANEESANDSKTSESAKGDDGVKVTDSNGP 268
>At1g16540.1 68414.m01981 molybdenum cofactor sulfurase (LOS5)
(ABA3) identical to molybdenum cofactor sulfurase
(LOS5/ABA3) [Arabidopsis thaliana] GI:15407262;
supporting cDNA gi|15407261|gb|AY034895.1|
Length = 819
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 369 ELDKRVQLVTRLMERGCSCNSGKCSKLLKVKKVGEGRYNIAGRNV 503
E++K L + GC CN G C+K L++ E R N+ ++
Sbjct: 412 EVEKLASLSGIQLRTGCFCNPGACAKYLELSH-SELRSNVEAGHI 455
>At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At3g25690,
At5g61090 [Arabidopsis thaliana]
Length = 681
Score = 27.9 bits (59), Expect = 4.5
Identities = 26/85 (30%), Positives = 31/85 (36%)
Frame = +1
Query: 130 ENEIAMEERDSGLDSAMSSAAWQFRDSSPEPDKTLVENSAPTQIQMKAKSQRWTTPTPKA 309
E E E S DS SS D P P T + +PT KS + P P
Sbjct: 273 ETEDHSETTTSETDSTESSPK---EDVPPPPPLTSPQTPSPTVSTFNTKSSLRSQPPPPP 329
Query: 310 PSLRGRWAALTPMCRSNPPMNSIRE 384
PS + A P PPM+ E
Sbjct: 330 PSPEHKAPAPPP----PPPMSKASE 350
>At3g12440.1 68416.m01549 extensin family protein contains
similarity to Swiss-Prot:Q38913 extensin 1 precursor
(AtExt1) (AtExt4) [Arabidopsis thaliana]
Length = 353
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +1
Query: 196 QFRDSSPEPDKTLVENSAPTQIQMKAKSQRWTTPTPKAPSLRGRWAALTPMCRSNPPMNS 375
QFR SP P + L +S + + + R+ + +P A R+ +++P RS+PP N+
Sbjct: 166 QFRSVSP-PARYL-SDSPLVRYRSVSPPARYLSVSPPA-----RYRSVSPPARSDPPANT 218
Query: 376 IREC 387
++ C
Sbjct: 219 LQLC 222
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = +1
Query: 160 SGLDSAMSSAAWQFRDSSPEPDKTLVENSAPTQIQMKAKSQRWTTPTPKAPSLRGRWAAL 339
+G S +++ + R S+P T+ + P+ ++ T PTP + S + L
Sbjct: 190 TGRSSTLTANSKSSRPSTPTSRATVSSATRPSLTNSRSTVSATTKPTPMSRSTSLSSSRL 249
Query: 340 TPMCRSNPPMNSIRECNS 393
TP S P ++ R S
Sbjct: 250 TPTA-SKPTTSTARSAGS 266
>At1g13300.1 68414.m01544 myb family transcription factor contains
Pfam domain, PF00249: Myb-like DNA-binding domain
Length = 344
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 272 PRVSGGQRRRRKHQV*GDGGQH*LRC-AAQTHQ 367
P V+GG+ R+R+ + G GG+ RC ++Q H+
Sbjct: 160 PMVNGGEGRKREAEKDGGGGRKQRRCWSSQLHR 192
>At1g12270.1 68414.m01419 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 572
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +1
Query: 85 LATKFNIEPPGLVQLENEIAMEERDSGLDSAMSSAAWQFRDSSPEPDKTLVENSAPTQIQ 264
L KF PP +E + E D G S+ + R+ PEP+ + E + +
Sbjct: 186 LNVKFRPPPPQ----GDEAEVPESDMGQSSSNEPEVEKKREPEPEPEPEVTEEKEKKERK 241
Query: 265 MKAKSQR 285
KAK ++
Sbjct: 242 EKAKKEK 248
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 27.5 bits (58), Expect = 5.9
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -1
Query: 40 CGERGHRSRTAR 5
CGERGH SRT R
Sbjct: 326 CGERGHNSRTCR 337
>At4g03350.1 68417.m00457 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 263
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 240 KFGPNPDPNESQESAVDNADAESTKSEGTVGSTDSDVPLKPTNELDKRVQLV 395
+ P+ DPN+S E + + K E G DS K T + +RV V
Sbjct: 69 RISPDADPNQSNEQTEQSKQIDDKKQE-FCGIQDSSESKKLTRVMARRVHNV 119
>At5g67620.1 68418.m08526 expressed protein
Length = 182
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 225 QNSG*KFGPNPDPNESQESAVDNADAESTKSEG 323
Q +G K PN DPN +Q+ A DNA A +G
Sbjct: 124 QETG-KVNPNSDPNPNQDGA-DNAVAGENGGDG 154
>At4g02970.1 68417.m00404 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 270
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 240 KFGPNPDPNESQESAVDNADAESTKSEGTVGSTDSDVPLKPTNELDKRV 386
+ P+ DPN+S E + + K E G DS K T + +RV
Sbjct: 70 RISPDADPNQSNEQTEQSKQIDDKKQE-FCGIQDSSESKKITRVMARRV 117
>At3g54810.2 68416.m06066 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
Y13650
Length = 322
Score = 27.1 bits (57), Expect = 7.8
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +1
Query: 109 PPGLVQLENEIAMEERDSGLDSAMSSAAWQFRDSSP----EPDKTLVENSAPTQIQMKAK 276
PP V+ E + +E ++ SS+ QFR SSP E + + + T + + K
Sbjct: 86 PPSFVE-ETLVEKKEDSFSTNTDSSSSHSQFRSSSPVSVLESSSSSSQTTNTTSLVLPGK 144
Query: 277 SQRWTTPTPKAP 312
R T P+ P
Sbjct: 145 HGRPRTKRPRPP 156
>At3g54810.1 68416.m06065 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
Y13650
Length = 322
Score = 27.1 bits (57), Expect = 7.8
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +1
Query: 109 PPGLVQLENEIAMEERDSGLDSAMSSAAWQFRDSSP----EPDKTLVENSAPTQIQMKAK 276
PP V+ E + +E ++ SS+ QFR SSP E + + + T + + K
Sbjct: 86 PPSFVE-ETLVEKKEDSFSTNTDSSSSHSQFRSSSPVSVLESSSSSSQTTNTTSLVLPGK 144
Query: 277 SQRWTTPTPKAP 312
R T P+ P
Sbjct: 145 HGRPRTKRPRPP 156
>At3g48470.1 68416.m05291 expressed protein
Length = 1017
Score = 27.1 bits (57), Expect = 7.8
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +3
Query: 258 DPNESQESAVDNADAESTKSEG----TVGSTDSDV-PLKPTNELD 377
DPNE + A N D ES K +G +V S +S V L+P + +D
Sbjct: 567 DPNEIVDLATLNCDTESDKDDGDDDASVSSDNSSVTSLEPYDLMD 611
>At3g46570.1 68416.m05055 glycosyl hydrolase family 17 protein
similar to glucan endo-1,3-beta-glucosidase precursor
SP:P52409 from [Triticum aestivum]
Length = 356
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 328 TVPSDLVLSASALSTADSWLS 266
TVP+ ++S S LS A SWLS
Sbjct: 81 TVPNSDIISLSKLSNARSWLS 101
>At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 650
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 372 LDKRVQLVTRLMERGCSCNSGKCSKLLKVKKVGEGR 479
+DK +Q+ +R++E GC N S LL + V EG+
Sbjct: 321 VDKAIQVFSRMVETGCRPNEYTYSLLLNL-LVAEGQ 355
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,330,057
Number of Sequences: 28952
Number of extensions: 271836
Number of successful extensions: 1101
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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