Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00657
         (616 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   3.6  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   3.6  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   4.7  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.2  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -2

Query: 216 LDEYSGLVIRVGGECLILFSGDGSVTLDEC 127
           L E   L   V G CLIL +G   V L  C
Sbjct: 228 LSETVALFNDVFGTCLILITGKSIVQLLTC 257


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -2

Query: 216 LDEYSGLVIRVGGECLILFSGDGSVTLDEC 127
           L E   L   V G CLIL +G   V L  C
Sbjct: 228 LSETVALFNDVFGTCLILITGKSIVQLLTC 257


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 534 SMKSTMEDEKLKEKISDSD 590
           S+ S  EDE+++ ++SD D
Sbjct: 18  SLLSKKEDEEVEHRLSDRD 36


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 587 RVRDLFLELLIL 552
           RV+DLFLE ++L
Sbjct: 581 RVKDLFLEAVLL 592


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,746
Number of Sequences: 336
Number of extensions: 2381
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)