Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00654
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    26   6.7  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    25   8.9  

>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 535 HEVKILETEKNHVVYRGGNTY 597
           HE ++   +K H  YRGG +Y
Sbjct: 305 HEAELRNNDKFHYRYRGGESY 325


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 347 QTGMVMNITDLKKYIKTAILEPLDHKNLDND 439
           Q G +    DL  +I   +    +HK LDND
Sbjct: 89  QQGQIETKPDLTLFINELLTTKKEHKKLDND 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,576
Number of Sequences: 5004
Number of extensions: 62102
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)