Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00654
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0120 + 16859617-16860504,16860970-16861146,16861242-168614...    29   4.0  
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609...    29   4.0  

>06_03_0120 +
           16859617-16860504,16860970-16861146,16861242-16861435,
           16861952-16862048
          Length = 451

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +3

Query: 78  ISIKKQNSI*CVKFLILTVFEFSIELLNYTMSSLPIVSIIRRETF-SSAHRLH-SPF--- 242
           IS+K Q  +  VK +I+T+ +F I      +  +P  SII   T+  + H L   P+   
Sbjct: 382 ISVKCQKEVMWVKKIIMTLTQFGIPHQRICVKEIPRSSIISEMTYLQTEHNLRMKPYKCV 441

Query: 243 LSDERTK 263
           LSD + K
Sbjct: 442 LSDLKAK 448


>03_02_0168 +
           6094658-6096220,6096335-6096608,6096671-6096821,
           6097052-6097262,6097344-6097550,6097982-6098350
          Length = 924

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 424 LMVEWFQDGCFYVFLEVSYIHHHTSLR 344
           L+V W+Q G FY F    + HH T  R
Sbjct: 632 LLVRWYQVGAFYPFFR-GHAHHDTKRR 657


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,498,616
Number of Sequences: 37544
Number of extensions: 328473
Number of successful extensions: 644
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)