Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00654
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)                       113   1e-25
SB_31649| Best HMM Match : No HMM Matches (HMM E-Value=.)             108   6e-24
SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)                 28   7.2  
SB_28695| Best HMM Match : Ras (HMM E-Value=0)                         28   7.2  
SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)                     28   9.5  

>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 1026

 Score =  113 bits (273), Expect = 1e-25
 Identities = 53/91 (58%), Positives = 67/91 (73%)
 Frame = +2

Query: 236  PVFK*RKNKKVYGKCNNPNGHGHNYVVLVTVKGPVDPQTGMVMNITDLKKYIKTAILEPL 415
            P    +KN++++G+CNN NGHGHNY V VTV   VD  TGMV+N+  LK  I+  +L  L
Sbjct: 907  PTLTNQKNQELFGRCNNKNGHGHNYKVSVTVASTVDGTTGMVINLVTLKGKIE-EVLGKL 965

Query: 416  DHKNLDNDVPYFKTMASTTENVAIYVWDQLQ 508
            DHKNLD DV YFKT+ ST ENVAIY++DQL+
Sbjct: 966  DHKNLDMDVAYFKTVVSTAENVAIYIYDQLK 996



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 18/41 (43%), Positives = 29/41 (70%)
 Frame = +3

Query: 144 SIELLNYTMSSLPIVSIIRRETFSSAHRLHSPFLSDERTKK 266
           ++ L   TMS  P V I R ETFS++HRLH+P L++++ ++
Sbjct: 877 AVYLAAVTMSR-PFVYITRTETFSASHRLHNPTLTNQKNQE 916


>SB_31649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score =  108 bits (259), Expect = 6e-24
 Identities = 49/85 (57%), Positives = 64/85 (75%)
 Frame = +2

Query: 251 RKNKKVYGKCNNPNGHGHNYVVLVTVKGPVDPQTGMVMNITDLKKYIKTAILEPLDHKNL 430
           ++N +++GKCNN NGHGHNY V VTV   VD  TGMVMN+  LK  I+  +L  LDHKNL
Sbjct: 90  QQNIELFGKCNNKNGHGHNYKVEVTVASTVDEDTGMVMNLVALKGKIE-EVLSELDHKNL 148

Query: 431 DNDVPYFKTMASTTENVAIYVWDQL 505
           D DV YF+T+ ST EN+A+Y+++QL
Sbjct: 149 DLDVEYFQTVVSTAENIAVYIYNQL 173



 Score = 35.9 bits (79), Expect = 0.036
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = +3

Query: 138 EFSIELLNYTMSSLPIVSIIRRETFSSAHRLHSPFLSDER 257
           E S+E+ +   S  P V I R ETFS+ HRLHS  L+D++
Sbjct: 53  ESSVEV-SELHSKRPFVYITRSETFSACHRLHSTKLTDQQ 91


>SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -2

Query: 346 RIYRTLYCYKNNIIMTVTIRIV 281
           RIYR+L+ YKN++ M ++I I+
Sbjct: 58  RIYRSLFTYKNSLTMIISIWII 79


>SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1198

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
 Frame = +2

Query: 257  NKKVYGKCNNPNGHGHNYVVLVTVKGPVDPQTGMVMNITDLKKYIKTAIL--EPLDHKNL 430
            +KK   +    +  GH+ +  V V+    P+ G+V ++ + KK  K      +PL  K+ 
Sbjct: 986  SKKESKESKRDSKKGHDQIDAVDVQLQDTPKNGLVSDVVETKKNSKKEKFKKKPLKSKSA 1045

Query: 431  DNDVPYFKTMASTTEN-VAIYVWDQ 502
            +N V   +T  +  ++    +VW+Q
Sbjct: 1046 ENLVEAQRTDLTIVQSPYTEWVWNQ 1070


>SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)
          Length = 1088

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 322 YKNNIIMTVTIRIVAFTINFFVLSSLKNGLCSL*AELKVSRRIIDTIGKEDIV 164
           Y  NII+ V +  VA ++    L S    + S+ A L V+  IIDT+    ++
Sbjct: 664 YDCNIILVVCVACVAISLTVIPLCSQFQLMLSVFAFLGVNMGIIDTVANSVLI 716


>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1058

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 365  NITDLKKYIKTAILEPLDHKNLDN--DVPYFKTMASTTENV 481
            N TDL +  ++ +++ +D KNL N  D  Y +T A T  N+
Sbjct: 1009 NKTDLAEDEESRVVKTIDGKNLANQYDALYMETSAKTGNNI 1049


>SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 934

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 156 LNYTMSSLPIVSIIRRETFSSAHRLHSPFLSDERTKKFM 272
           +N     L  ++++R+E   SAH +HS +   + TK ++
Sbjct: 237 VNEAWERLKRLAVMRKERLESAHEIHSFYRDADETKNWI 275


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,365,690
Number of Sequences: 59808
Number of extensions: 424127
Number of successful extensions: 1094
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)