Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00654
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-6|ABC71844.1|  137|Caenorhabditis elegans Hypothetical ...   107   6e-24
AF000196-5|AAC24255.2|  140|Caenorhabditis elegans Hypothetical ...   107   6e-24
U64833-9|AAS47683.1|  312|Caenorhabditis elegans Serpentine rece...    30   1.6  
Z74042-1|CAA98536.1|  444|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z83107-2|CAB05503.2|  356|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z83107-1|CAB05506.2|  461|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AF000196-6|ABC71844.1|  137|Caenorhabditis elegans Hypothetical
           protein B0041.6b protein.
          Length = 137

 Score =  107 bits (258), Expect = 6e-24
 Identities = 47/90 (52%), Positives = 68/90 (75%)
 Frame = +2

Query: 254 KNKKVYGKCNNPNGHGHNYVVLVTVKGPVDPQTGMVMNITDLKKYIKTAILEPLDHKNLD 433
           +NK+ +GKCNN NGHGHNYV  V ++G VDP +GMV ++  LKK + + +L+ +DH+NLD
Sbjct: 27  ENKETFGKCNNSNGHGHNYVWKVKLRGEVDPTSGMVYDLAKLKKEM-SLVLDTVDHRNLD 85

Query: 434 NDVPYFKTMASTTENVAIYVWDQLQE*WKN 523
            DV +FKT  ST+ENVAIY++++L+    N
Sbjct: 86  KDVEFFKTTVSTSENVAIYMFEKLKSVMSN 115



 Score = 36.3 bits (80), Expect = 0.024
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = +3

Query: 177 LPIVSIIRRETFSSAHRLHSPFLSDERTKK 266
           +PIV++ R ++FS+AHRLHS  LSD   K+
Sbjct: 1   MPIVTMERVDSFSAAHRLHSEKLSDAENKE 30


>AF000196-5|AAC24255.2|  140|Caenorhabditis elegans Hypothetical
           protein B0041.6a protein.
          Length = 140

 Score =  107 bits (258), Expect = 6e-24
 Identities = 47/90 (52%), Positives = 68/90 (75%)
 Frame = +2

Query: 254 KNKKVYGKCNNPNGHGHNYVVLVTVKGPVDPQTGMVMNITDLKKYIKTAILEPLDHKNLD 433
           +NK+ +GKCNN NGHGHNYV  V ++G VDP +GMV ++  LKK + + +L+ +DH+NLD
Sbjct: 30  ENKETFGKCNNSNGHGHNYVWKVKLRGEVDPTSGMVYDLAKLKKEM-SLVLDTVDHRNLD 88

Query: 434 NDVPYFKTMASTTENVAIYVWDQLQE*WKN 523
            DV +FKT  ST+ENVAIY++++L+    N
Sbjct: 89  KDVEFFKTTVSTSENVAIYMFEKLKSVMSN 118



 Score = 37.1 bits (82), Expect = 0.014
 Identities = 17/33 (51%), Positives = 24/33 (72%)
 Frame = +3

Query: 168 MSSLPIVSIIRRETFSSAHRLHSPFLSDERTKK 266
           M  +PIV++ R ++FS+AHRLHS  LSD   K+
Sbjct: 1   MFRMPIVTMERVDSFSAAHRLHSEKLSDAENKE 33


>U64833-9|AAS47683.1|  312|Caenorhabditis elegans Serpentine
           receptor, class x protein115 protein.
          Length = 312

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -2

Query: 448 VWNIII*ILMVEWFQDGCFYVFLEVSYIHHHTSLRIYRTLYCYKNNIIMTVTIRIVAFTI 269
           +W I I ++ +    DGC Y+F   S     T     RTL  Y  N+++ +   I++F+I
Sbjct: 128 LWCIAI-LMSLPAMIDGCSYIFFVDSVSWSPTDTVCSRTLSEYVTNLVLVMA--IISFSI 184

Query: 268 N 266
           N
Sbjct: 185 N 185


>Z74042-1|CAA98536.1|  444|Caenorhabditis elegans Hypothetical
           protein T11F9.1 protein.
          Length = 444

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +3

Query: 129 TVFEFSIELLNYTMSSLPIVSIIRRETFSSAHRLHSPFLSDERTKKFMVNATILMVTVII 308
           T+    I   +    ++ IV ++ +  F     LHS  LSD + K  + NAT  MV ++ 
Sbjct: 213 TIVTILIPFFSLAFINIRIVLVLSKNEFKF---LHSTKLSDAKRKSAVRNATRTMVFIVF 269

Query: 309 MLFL*Q*RVL*ILKLVW 359
              L    VL ++ ++W
Sbjct: 270 TYLL--SNVLNVIIIIW 284


>Z83107-2|CAB05503.2|  356|Caenorhabditis elegans Hypothetical
           protein F32A7.3b protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = +2

Query: 254 KNKKVYGKCNNPNGHGHNYVVLVTVKGPVDPQTGMVMNITDLKKYIKTAILEPLDHKNLD 433
           K+  + G C     HGH +VV V V   +  +  +   +T L+ Y+K A     D     
Sbjct: 131 KSDGIKGHCR----HGHLHVVYVCVNEEIFSEEAIKGELTSLETYLKEA-----DAMQKQ 181

Query: 434 NDVPYFKTMASTTE 475
           +D  +FK +   T+
Sbjct: 182 DDERFFKDVNDKTQ 195


>Z83107-1|CAB05506.2|  461|Caenorhabditis elegans Hypothetical
           protein F32A7.3a protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = +2

Query: 254 KNKKVYGKCNNPNGHGHNYVVLVTVKGPVDPQTGMVMNITDLKKYIKTAILEPLDHKNLD 433
           K+  + G C     HGH +VV V V   +  +  +   +T L+ Y+K A     D     
Sbjct: 236 KSDGIKGHCR----HGHLHVVYVCVNEEIFSEEAIKGELTSLETYLKEA-----DAMQKQ 286

Query: 434 NDVPYFKTMASTTE 475
           +D  +FK +   T+
Sbjct: 287 DDERFFKDVNDKTQ 300


>U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical
           protein C16C8.16 protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 389 IKTAILEPLDHKNLDNDVPYFK 454
           +KT +  P++ K LDN  P+FK
Sbjct: 492 VKTPLEAPIEDKKLDNKKPFFK 513


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,514,836
Number of Sequences: 27780
Number of extensions: 341435
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)