Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00652
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1788 - 39873900-39873986,39874009-39874137,39874180-398742...    29   2.3  
02_04_0604 + 24287169-24287199,24287859-24288044,24288389-242889...    29   3.1  
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310...    29   4.1  
01_01_1069 - 8420454-8420670,8421272-8421447,8421556-8421738,842...    28   5.4  
11_08_0075 + 28173220-28173433,28175348-28177083                       27   9.4  

>01_06_1788 -
           39873900-39873986,39874009-39874137,39874180-39874246,
           39874874-39874909,39875146-39875292,39875772-39875899,
           39876349-39876435,39876523-39876633,39877433-39877600,
           39877665-39877749,39877826-39877942,39878051-39878127,
           39879981-39880077,39880175-39880377,39880519-39880645,
           39880687-39880754,39880855-39880908,39880990-39881108,
           39881651-39881729,39881803-39881865,39882113-39882232,
           39882718-39882774,39882872-39882988,39883122-39883172,
           39883262-39883360,39883438-39883583,39883740-39883887
          Length = 928

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 291 HCEHETIWSTCRSMFDLPHLSYM*DLALT 205
           + E  + WSTCR+M D+    YM  L +T
Sbjct: 371 YMERVSFWSTCRNMMDIAASLYMATLTVT 399


>02_04_0604 +
           24287169-24287199,24287859-24288044,24288389-24288923,
           24289244-24289280
          Length = 262

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = -1

Query: 185 DPWLGFLPIVSNHNLFPHYQISFSISYLPFADYILHVFLYRWWT*QTKSIPYFPPQH 15
           DP  G  P++S   L P  Q+    S   F+   L     RWW      +PY  P H
Sbjct: 84  DPIKGIKPLLSIDKLRPRTQVGCRASLSSFSFPELET-KPRWWWRTLACVPYLLPLH 139


>06_01_0437 +
           3101449-3101521,3101872-3102232,3103766-3103958,
           3104051-3104848,3104997-3105143,3106024-3106377
          Length = 641

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 383 HSPQLIININAVSHRLQYLLTTQMHIAFNHHTV 285
           H+ Q I  +NAV  + Q  +  + HI F+ H++
Sbjct: 263 HARQFIAQVNAVLQKYQGEVVEEFHIRFDFHSI 295


>01_01_1069 -
           8420454-8420670,8421272-8421447,8421556-8421738,
           8421885-8421980,8422064-8422192,8422266-8422445,
           8422524-8422634,8422714-8422869,8422983-8423078,
           8423160-8423327,8423402-8423642,8423724-8423851,
           8424042-8424134,8424214-8424309,8424431-8424523,
           8424741-8424850,8424999-8425134,8425215-8425315,
           8426029-8426152,8426237-8426411,8426523-8426681,
           8427423-8427536,8427669-8427848,8428926-8429005
          Length = 1113

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 137 PHYQISFSISYLPFADYILHVFLYR 63
           P +Q+SF +S + FA +++H+  Y+
Sbjct: 390 PQFQVSFVVSGVAFAKHLIHLHAYQ 414


>11_08_0075 + 28173220-28173433,28175348-28177083
          Length = 649

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 75  NMKNVVSKRKIGNRKTNLVVGEKVMVRDYRKEAKPWVQGVVLAESVPGLTYMIDVEG 245
           NM+N +   KI ++   L   +K  + D   +A  W+ G  LAE+      M ++EG
Sbjct: 554 NMRNTIKDEKIASK---LPAADKKKIEDAIDQAIQWLDGNQLAEADEFDDKMKELEG 607


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,659,902
Number of Sequences: 37544
Number of extensions: 293403
Number of successful extensions: 571
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)