BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00652 (635 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_1788 - 39873900-39873986,39874009-39874137,39874180-398742... 29 2.3 02_04_0604 + 24287169-24287199,24287859-24288044,24288389-242889... 29 3.1 06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 29 4.1 01_01_1069 - 8420454-8420670,8421272-8421447,8421556-8421738,842... 28 5.4 11_08_0075 + 28173220-28173433,28175348-28177083 27 9.4 >01_06_1788 - 39873900-39873986,39874009-39874137,39874180-39874246, 39874874-39874909,39875146-39875292,39875772-39875899, 39876349-39876435,39876523-39876633,39877433-39877600, 39877665-39877749,39877826-39877942,39878051-39878127, 39879981-39880077,39880175-39880377,39880519-39880645, 39880687-39880754,39880855-39880908,39880990-39881108, 39881651-39881729,39881803-39881865,39882113-39882232, 39882718-39882774,39882872-39882988,39883122-39883172, 39883262-39883360,39883438-39883583,39883740-39883887 Length = 928 Score = 29.5 bits (63), Expect = 2.3 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 291 HCEHETIWSTCRSMFDLPHLSYM*DLALT 205 + E + WSTCR+M D+ YM L +T Sbjct: 371 YMERVSFWSTCRNMMDIAASLYMATLTVT 399 >02_04_0604 + 24287169-24287199,24287859-24288044,24288389-24288923, 24289244-24289280 Length = 262 Score = 29.1 bits (62), Expect = 3.1 Identities = 18/57 (31%), Positives = 23/57 (40%) Frame = -1 Query: 185 DPWLGFLPIVSNHNLFPHYQISFSISYLPFADYILHVFLYRWWT*QTKSIPYFPPQH 15 DP G P++S L P Q+ S F+ L RWW +PY P H Sbjct: 84 DPIKGIKPLLSIDKLRPRTQVGCRASLSSFSFPELET-KPRWWWRTLACVPYLLPLH 139 >06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958, 3104051-3104848,3104997-3105143,3106024-3106377 Length = 641 Score = 28.7 bits (61), Expect = 4.1 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = -1 Query: 383 HSPQLIININAVSHRLQYLLTTQMHIAFNHHTV 285 H+ Q I +NAV + Q + + HI F+ H++ Sbjct: 263 HARQFIAQVNAVLQKYQGEVVEEFHIRFDFHSI 295 >01_01_1069 - 8420454-8420670,8421272-8421447,8421556-8421738, 8421885-8421980,8422064-8422192,8422266-8422445, 8422524-8422634,8422714-8422869,8422983-8423078, 8423160-8423327,8423402-8423642,8423724-8423851, 8424042-8424134,8424214-8424309,8424431-8424523, 8424741-8424850,8424999-8425134,8425215-8425315, 8426029-8426152,8426237-8426411,8426523-8426681, 8427423-8427536,8427669-8427848,8428926-8429005 Length = 1113 Score = 28.3 bits (60), Expect = 5.4 Identities = 9/25 (36%), Positives = 18/25 (72%) Frame = -1 Query: 137 PHYQISFSISYLPFADYILHVFLYR 63 P +Q+SF +S + FA +++H+ Y+ Sbjct: 390 PQFQVSFVVSGVAFAKHLIHLHAYQ 414 >11_08_0075 + 28173220-28173433,28175348-28177083 Length = 649 Score = 27.5 bits (58), Expect = 9.4 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = +3 Query: 75 NMKNVVSKRKIGNRKTNLVVGEKVMVRDYRKEAKPWVQGVVLAESVPGLTYMIDVEG 245 NM+N + KI ++ L +K + D +A W+ G LAE+ M ++EG Sbjct: 554 NMRNTIKDEKIASK---LPAADKKKIEDAIDQAIQWLDGNQLAEADEFDDKMKELEG 607 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,659,902 Number of Sequences: 37544 Number of extensions: 293403 Number of successful extensions: 571 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 563 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 571 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1561213104 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -