Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00652
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26963| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_6983| Best HMM Match : rve (HMM E-Value=0.011) 32 0.45
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_15292| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_6152| Best HMM Match : rve (HMM E-Value=0.0036) 29 3.2
SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27) 29 4.2
SB_14844| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_36475| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_24401| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
>SB_26963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 126 LVVGEKVMVRDYRKEAKPWVQGVVLAESVPGLTYMIDVEGQTW 254
L +GE V + KE K W +GV + P +Y++D++G +
Sbjct: 426 LNIGEPVRMTSLPKETKKWKKGVCFGKVAP-RSYLVDIDGSIY 467
>SB_6983| Best HMM Match : rve (HMM E-Value=0.011)
Length = 251
Score = 31.9 bits (69), Expect = 0.45
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +3
Query: 12 LMLGREIRNRFSLLRPPPIEENMKNVVSKRKIGNRKTNLVVGEKVMVRDYRKEAKPWVQG 191
L++ R+ R RFS LR P + + ++ +G + VG+KV V + R + W+ G
Sbjct: 97 LLMRRQPRTRFSALR-PSLSSQKEADTFEQNVG-CVSKFAVGDKVYVLNLRAGPR-WLPG 153
Query: 192 VVLAESVPGLTYMIDVEG 245
+V+ V +Y + V+G
Sbjct: 154 IVI--EVLQRSYYVHVDG 169
>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +3
Query: 9 ELMLGREIRNRFSLLRPPPIEENMKNVVSKRKIGNRKTNL---VVGEKVMVRDYRKEAKP 179
EL+ GR+++ RF LL P N + ++ +RKT L G+ V +++ +
Sbjct: 925 ELLNGRKLKTRFDLLHPALRGRVRDNQSNMKRYHDRKTPLRAFTAGDLVRAKNFGHGVR- 983
Query: 180 WVQGVVLAESVPGLTYMIDV 239
W +G + + P L+Y +++
Sbjct: 984 WFKGKISKVTGP-LSYEVEL 1002
>SB_15292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 983
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +3
Query: 12 LMLGREIRNRFSLLRPP-----PIEENMKNVVSKRKIGNRKTNLVVGEKVMVRDYR 164
+M GR +R R L++P +++ ++ + GN+ L VG+ M RDYR
Sbjct: 455 IMFGRTLRTRLDLVKPNLNRKMVNQQHQGSMQAANAPGNKTRLLEVGDHFMTRDYR 510
>SB_6152| Best HMM Match : rve (HMM E-Value=0.0036)
Length = 555
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +3
Query: 126 LVVGEKVMVRDYRKEAKPWVQGVVLAESVPGLTYMIDVEGQTW 254
L +GE V + K +K W +GV + + P ++++D++G +
Sbjct: 435 LNIGEHVRMTSLPKVSKKWKKGVCIGKVAP-RSHLVDIDGSIY 476
>SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1088
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +3
Query: 51 LRPPPIEENMKNVVSK--RKIGNRKTNLVVGEKVMVRDYRKEAKPWVQGVV 197
LR I+E M+N+V + +++ + +L + K ++DY K+ K W +G V
Sbjct: 983 LRQENIKE-MRNIVKEFYQRLVAKINDLKISHKKYLKDYIKQTKSWKKGEV 1032
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 359 INAVSHRLQYLLTTQMHIAFNHHTVN-MKLFGRRA 258
IN V R+Q L T Q + NHH N ++ FG+ A
Sbjct: 810 INLVVSRMQILTTQQPGLIINHHASNTLESFGKWA 844
>SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)
Length = 1154
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +3
Query: 9 ELMLGREIRNRFSLLRP---PPIEENMKNVVSKRKIGNRKTNLVVGEKVMVRDYRKEAKP 179
E+++GR++R+RF LL P I + + + + + G+ V +++ K
Sbjct: 941 EMLMGRKLRSRFDLLHPNLQGKIRQKQEQMNGQHDAHAKDRQFKPGDHVYFKNFGYGPK- 999
Query: 180 WVQGVV 197
W+ GV+
Sbjct: 1000 WLPGVI 1005
>SB_14844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 310 CICVVKRYCNLWLTAFMFIISWG 378
C+ + KRYC +LT F++S+G
Sbjct: 102 CLFLPKRYCIAFLTMLAFLLSYG 124
>SB_36475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 310 CICVVKRYCNLWLTAFMFIISWG 378
C+ KRYC ++LT F++S+G
Sbjct: 345 CLFPPKRYCIVFLTMLAFLLSYG 367
>SB_24401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 503 ERTLNRTLLGKTRRKLSKERDSYILELQVSSAFRNW 396
++ + L+GK R+ + KE +SY L V R+W
Sbjct: 419 DKWVRHRLVGKLRKAVDKENESYYNSLAVVLQRRDW 454
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,430,710
Number of Sequences: 59808
Number of extensions: 360772
Number of successful extensions: 713
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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