Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00652
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical...    29   2.8  
Z75552-3|CAA99940.1|  465|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical ...    28   4.9  
U42841-5|AAM97959.1|  657|Caenorhabditis elegans Gex interacting...    27   8.5  
U42841-4|AAK77640.1|  706|Caenorhabditis elegans Gex interacting...    27   8.5  
U42841-3|AAK77638.1|  663|Caenorhabditis elegans Gex interacting...    27   8.5  
U42841-1|AAM97958.1|  716|Caenorhabditis elegans Gex interacting...    27   8.5  
AF036705-8|AAB95169.1|  685|Caenorhabditis elegans Hypothetical ...    27   8.5  

>AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical
           protein F37C4.1 protein.
          Length = 612

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 173 GFLPIVSNHNLFPHYQISFSISYLPFADYILHVFLYRWW 57
           GFL ++S  NL    +I   I  + F+ Y++H  +Y +W
Sbjct: 222 GFLMLLSEDNLVLSNRILIYIGDISFSLYLIHWPIYAYW 260


>Z75552-3|CAA99940.1|  465|Caenorhabditis elegans Hypothetical
           protein W04D2.3 protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -1

Query: 467 RRKLSKERDSYILELQVSSAFRNWFDISHSPQLIININAVSHRLQYLLTTQMH 309
           R+K+   +    L  Q SS F +W  +       +N+ A  + + Y L T  H
Sbjct: 177 RKKVQVHKTVTFLNFQYSSGFISWIYLFTKVLYFLNVFAQLYLMNYFLGTNRH 229


>AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical
           protein F37C4.2 protein.
          Length = 686

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 173 GFLPIVSNHNLFPHYQISFSISYLPFADYILHVFLYRWW 57
           GFL ++S  NL    +I   I  + F+ Y++H  +Y +W
Sbjct: 296 GFLMLLSEDNLVLSNRILTYIGDISFSLYLIHWPIYAYW 334


>U42841-5|AAM97959.1|  657|Caenorhabditis elegans Gex interacting
           protein protein16, isoform k protein.
          Length = 657

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/50 (24%), Positives = 28/50 (56%)
 Frame = -1

Query: 491 NRTLLGKTRRKLSKERDSYILELQVSSAFRNWFDISHSPQLIININAVSH 342
           +R  +  T  +   ++  Y+ +  VS+A  N+  + +SP+ ++++N  SH
Sbjct: 266 SRNSVETTTTQRDHDKSGYVTD--VSTATWNFSTVDYSPRSVVSMNGASH 313


>U42841-4|AAK77640.1|  706|Caenorhabditis elegans Gex interacting
           protein protein16, isoform c protein.
          Length = 706

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/50 (24%), Positives = 28/50 (56%)
 Frame = -1

Query: 491 NRTLLGKTRRKLSKERDSYILELQVSSAFRNWFDISHSPQLIININAVSH 342
           +R  +  T  +   ++  Y+ +  VS+A  N+  + +SP+ ++++N  SH
Sbjct: 272 SRNSVETTTTQRDHDKSGYVTD--VSTATWNFSTVDYSPRSVVSMNGASH 319


>U42841-3|AAK77638.1|  663|Caenorhabditis elegans Gex interacting
           protein protein16, isoform a protein.
          Length = 663

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/50 (24%), Positives = 28/50 (56%)
 Frame = -1

Query: 491 NRTLLGKTRRKLSKERDSYILELQVSSAFRNWFDISHSPQLIININAVSH 342
           +R  +  T  +   ++  Y+ +  VS+A  N+  + +SP+ ++++N  SH
Sbjct: 272 SRNSVETTTTQRDHDKSGYVTD--VSTATWNFSTVDYSPRSVVSMNGASH 319


>U42841-1|AAM97958.1|  716|Caenorhabditis elegans Gex interacting
           protein protein16, isoform j protein.
          Length = 716

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/50 (24%), Positives = 28/50 (56%)
 Frame = -1

Query: 491 NRTLLGKTRRKLSKERDSYILELQVSSAFRNWFDISHSPQLIININAVSH 342
           +R  +  T  +   ++  Y+ +  VS+A  N+  + +SP+ ++++N  SH
Sbjct: 325 SRNSVETTTTQRDHDKSGYVTD--VSTATWNFSTVDYSPRSVVSMNGASH 372


>AF036705-8|AAB95169.1|  685|Caenorhabditis elegans Hypothetical
           protein F37C4.3 protein.
          Length = 685

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 173 GFLPIVSNHNLFPHYQISFSISYLPFADYILHVFLYRWW 57
           GFL ++S  NL    +I   I  + ++ Y++H  +Y +W
Sbjct: 295 GFLMLLSEDNLILSNRILAYIGDISYSLYLIHWPIYAYW 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,814,895
Number of Sequences: 27780
Number of extensions: 276082
Number of successful extensions: 631
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)