Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00652
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    26   0.35 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.47 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.3  

>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 69  EENMKNVVSKRKIGNRKTNLVVGEKVMVRDYRKEAKPWVQ 188
           + N   V  K+  G RK   +V      + Y+K+  PWVQ
Sbjct: 120 QRNPSVVGRKKSSGWRKLRNIVHWTPFFQTYKKQRYPWVQ 159


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 78  MKNVVSKRKIGNRKTNLVVGEKVMVRDYRKEAKPWVQ 188
           ++ V S +  G RK   +V      + Y+K+  PWVQ
Sbjct: 442 LQPVKSSKSSGWRKLRNIVHWTPFFQTYKKQRYPWVQ 478


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 108 GNRKTNLVVGEKVMVRDYRKEAKPWVQ 188
           G RK   +V      + Y+K+  PWVQ
Sbjct: 218 GWRKLRNIVHWTPFFQTYKKQRYPWVQ 244


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 445 RSLLNFRLVFPNSVRLSVRSYINN 516
           R  L F   FP+ V+   R ++NN
Sbjct: 383 RQTLMFSATFPDEVQHLARRFLNN 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,330
Number of Sequences: 438
Number of extensions: 3689
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)