Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00652
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02500.1 68418.m00183 heat shock cognate 70 kDa protein 1 (HS...    30   1.1  
At1g28420.1 68414.m03494 homeobox transcription factor, putative...    29   2.6  
At1g06640.1 68414.m00702 2-oxoglutarate-dependent dioxygenase, p...    29   3.4  

>At5g02500.1 68418.m00183 heat shock cognate 70 kDa protein 1
           (HSC70-1) (HSP70-1) identical to SP|P22953 Heat shock
           cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis
           thaliana}
          Length = 651

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 75  NMKNVVSKRKIGNRKTNLVVGEKVMVRDYRKEAKPWVQGVVLAES 209
           NM+N +   KIG +   L   +K  + D  ++A  W++G  LAE+
Sbjct: 554 NMRNTIQDEKIGEK---LPAADKKKIEDSIEQAIQWLEGNQLAEA 595


>At1g28420.1 68414.m03494 homeobox transcription factor, putative
            similar to homeobox transcription factor Hox7 GI:19486
            [Lycopersicon peruvianum]
          Length = 1703

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 27   EIRNRFSLLRPPPIEENMKNVVSKRKIGNRKTNLVVGEKVMVRDYRKEAKPWVQGV 194
            E+   FS   PPP    MK++V +     R  N VVG    V D   + + W+QG+
Sbjct: 889  ELEKEFS--SPPP--STMKSIVPQHS--ERHKNTVVGGVDAVIDESNQGQSWIQGL 938


>At1g06640.1 68414.m00702 2-oxoglutarate-dependent dioxygenase,
           putative similar to 2A6 (GI:599622) and tomato ethylene
           synthesis regulatory protein E8 (SP|P10967); contains
           Pfam profile: PF00671 Iron/Ascorbate oxidoreductase
           family
          Length = 369

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -1

Query: 398 WFDISHSP-QLIININAVSHRLQYLLTTQMHIAFNHHTV-NMKLFGRRAVPCLTFHIY 231
           WFD+ H P  LIINI      L  L+T    I+  H  + N     R +V C  FH +
Sbjct: 266 WFDVPHVPGALIINIG----DLLQLITNDKFISLKHRVLANRATRARVSVACF-FHTH 318


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,867,039
Number of Sequences: 28952
Number of extensions: 250558
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)