Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00647
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1220 + 35021495-35021647,35022819-35022905,35022988-35023086     45   5e-05
04_04_0352 + 24619621-24619757,24620102-24620411,24621022-246214...    33   0.31 
03_02_0894 + 12226006-12226484,12226601-12226709                       32   0.54 
05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16...    31   1.2  
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007           29   3.8  
08_01_0698 + 6162127-6162160,6162317-6162512,6162654-6162699           28   6.6  
07_03_0940 + 22762176-22762345,22763207-22763252                       28   6.6  

>02_05_1220 + 35021495-35021647,35022819-35022905,35022988-35023086
          Length = 112

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 22/61 (36%), Positives = 34/61 (55%)
 Frame = +1

Query: 73  IRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVP 252
           +R +KIKT   KRI             +  +   +K++G D +++++QE VL ES MMVP
Sbjct: 4   LRNLKIKTSTCKRIVKELRSYEKEVEKEAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63

Query: 253 D 255
           D
Sbjct: 64  D 64


>04_04_0352 +
           24619621-24619757,24620102-24620411,24621022-24621429,
           24621773-24622357
          Length = 479

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 516 PQHKSRHQNKCHQEYNKHK-FRHSKDYIDGHEIKFELQIICHLSHQHTSRP 665
           P H+ R   +C   Y  HK F     +  G +  + LQI C +   HTSRP
Sbjct: 33  PPHELRAPRRCSPSYTSHKVFHRDVGFFSGWQ-SYNLQIYCCI---HTSRP 79


>03_02_0894 + 12226006-12226484,12226601-12226709
          Length = 195

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 572 VSPQQGLHRRPRDQIRAPNYMPPQSPAYFTATPSLTPMLLLTHTHSHA 715
           + P   L RR R  +RAP+    Q+P  +   PSLT  + + H HS A
Sbjct: 26  IEPCGLLQRRSRWAVRAPS-TAQQAPFTYPQPPSLTKKICIHHLHSPA 72


>05_01_0024 -
           164618-165139,166884-166949,167046-167216,167321-167422,
           167538-167600,167679-167825,168234-168359,168742-168921,
           169183-169322,169688-169861,170096-170123
          Length = 572

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 557 IQQAQVSPQQGLHRRPRDQIRAPNYMPPQSPAYFTATPSLTP 682
           ++Q Q  PQ      P  + +AP   P Q P Y   TP+  P
Sbjct: 428 VKQHQQEPQDNSRELPASEPKAPPGWPLQPPMYLPVTPAPPP 469


>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
          Length = 952

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 258 QRRLIKAYTDLKTTLE-TEQDLKEHEEYITAEQVLKDAEPQ 377
           +RR+ K Y D K  +   E D+K+  +   A   +KD EP+
Sbjct: 284 RRRVRKEYDDFKARINGLEHDIKQRSDSYNAAAGVKDGEPR 324


>08_01_0698 + 6162127-6162160,6162317-6162512,6162654-6162699
          Length = 91

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 585 CCGETCACCILGDICF 538
           CC   C CC+L D+CF
Sbjct: 77  CCAALCCCCLL-DMCF 91


>07_03_0940 + 22762176-22762345,22763207-22763252
          Length = 71

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 585 CCGETCACCILGDICF 538
           CC   C CC+L D+CF
Sbjct: 57  CCAALCCCCLL-DMCF 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,153,792
Number of Sequences: 37544
Number of extensions: 251642
Number of successful extensions: 902
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)