Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00647
(731 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41462| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_57086| Best HMM Match : PT (HMM E-Value=2.4) 31 0.73
SB_42318| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_45619| Best HMM Match : M (HMM E-Value=0.01) 29 2.9
SB_19120| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07) 29 5.1
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 28 6.8
SB_9805| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5) 28 9.0
>SB_41462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 46 IQQEMADPRIRQIKIKTGVVKR 111
I DPR+RQ+KIKTG+VKR
Sbjct: 86 IMAAAVDPRLRQLKIKTGIVKR 107
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 234 VPDDGSRCQRRLIKAYT--DLKTTLETEQDLKEHEEYITAEQVLK 362
V D G + + + + D+K E E+DL + E+YI A+Q+L+
Sbjct: 170 VVDQGKKVENMIAENQDEHDIKKQAECEKDLSDKEDYIQAKQMLE 214
>SB_57086| Best HMM Match : PT (HMM E-Value=2.4)
Length = 226
Score = 31.5 bits (68), Expect = 0.73
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 501 PPPRQPQHKSRHQNKCHQEYNKHKFRHSKDYIDGHEIKFELQIICHLSHQHTSR-PHPH* 677
P Q H+ H HQ +++ ++ Y + ++ Q +HQ+T + H +
Sbjct: 81 PYTHQYTHQYTHHQYTHQYTHQYPHQYPHQYPHQYPHQYPHQYTHQYTHQYTHQYTHQYT 140
Query: 678 HQCYYSLTHTHT 713
HQ + TH +T
Sbjct: 141 HQYTHQYTHQYT 152
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 513 QPQHKSRHQNKCHQEYNKHKFRHSKDYIDGHEIKFELQIICHLSHQHTSR-PHPH*HQCY 689
Q H+ HQ HQ +++ + + Y + + +HQ+T + PH + HQC
Sbjct: 146 QYTHQYTHQYT-HQYTHQYTHQCTHPYTHQYTHPYTHPYTHPYTHQYTHQYPHQYTHQCT 204
Query: 690 YSLTHTHT 713
+ TH +T
Sbjct: 205 HQYTHQYT 212
>SB_42318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 474
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 546 CHQEYNKHKFRHSKDYIDGHEIKFELQIICHLSHQHTSRPHPH*HQCYYSLTHTHTR 716
C Q + HK S +Y + E + EL HLSH RP + +Y+L T R
Sbjct: 50 CRQSCHSHKDCFSINYKE-KEYRCELNAATHLSHPQMLRPEAN---AFYALIKTPNR 102
>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Frame = +3
Query: 516 PQHKSRHQNKCHQEYNKHKFRHSKDYIDGHEIKFELQIICHLSHQHTSRPH-PH*HQCYY 692
P +RH H + RH D H + H +H H + H H +
Sbjct: 425 PHETTRHDTHLHDTHTHETTRHDTHLHDTH----THETTRHDTHLHDTHTHETTRHDTHL 480
Query: 693 SLTHTHTRTESD 728
THTH T D
Sbjct: 481 HDTHTHETTRHD 492
>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
Length = 1315
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 594 CSPCCGETCACCILGDICFDDD 529
C C G +C CC G +C DDD
Sbjct: 774 CCCCGGVSCCCC--GGVCCDDD 793
>SB_19120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 546 CHQEYNKHKFRHSKDYIDGHEIKFELQIICHLSHQHTSRPHPH*HQCYYSLTHTHTR 716
C Q + HK S +Y + E + EL HLSH RP + +Y+L T R
Sbjct: 188 CRQSCHSHKDCLSINYKE-KEYRCELNAATHLSHPQMLRPEAN---AFYALIKTPNR 240
>SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07)
Length = 721
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +3
Query: 495 NVPPPRQPQHKSRHQNKCHQEYNKHKFRHSKDYIDGHEIKFELQIICHLSHQHTSRPH-- 668
NV Q + H+N Y H+ + + HE + I ++SH+H +
Sbjct: 644 NVSHQHMGQMNASHENMGPMNYLSHEHMCPMNNVP-HE---HMGPINNVSHEHMCPMNNV 699
Query: 669 PH*HQCYYSLTHTHTRTE 722
PH H C +++H H E
Sbjct: 700 PHEHVCLMNVSHEHVSNE 717
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 303 ETEQDLKEHEEYITAEQVLKDAEPQLPAI 389
ETE+ +++HEE + +E K E ++PA+
Sbjct: 1636 ETEETVEQHEEVVESEAGEKVEEEEVPAV 1664
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 303 ETEQDLKEHEEYITAEQVLKDAEP 374
ETE+ ++EHEE + +E+V ++ P
Sbjct: 1591 ETEETVEEHEEVVESEEVEEEEAP 1614
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 303 ETEQDLKEHEEYITAEQVLKDAEPQLPAI 389
ETE+ ++EHEE + +E+ K E +P +
Sbjct: 1731 ETEETVEEHEEVVESEEGKKVEEEGVPTV 1759
>SB_9805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 540 NKCHQEYNKHKFRHSKDYIDGHEIKFELQIICHLSHQHTSRPHP 671
N+C Q++++ + + S+D ID K Q H ++Q TSR P
Sbjct: 79 NQCFQQFDRLRAKLSRDVIDKF-TKPRTQAHGHTNNQDTSRRQP 121
>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 549 HQEYNKHKFRHSKDY---IDGHEIKFELQIICHLSH-QHTSRPHPH*HQCYYSLTHTHT 713
H YN H RH+ Y + I+++ H S+ HT+R H YY+LT +T
Sbjct: 1003 HASYNSHTARHTMHYYTLTTRYTIQYDTVHHVHASYNSHTARHTMH----YYTLTTRYT 1057
>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1221
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 495 NVPPPRQPQHKSRHQNKCHQEYNKHKFRHSKD 590
NVP +PQ K+ N +E+NK KD
Sbjct: 682 NVPKDEKPQGKTESANPSEEEHNKEDKPQEKD 713
>SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)
Length = 260
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/54 (29%), Positives = 19/54 (35%)
Frame = +3
Query: 549 HQEYNKHKFRHSKDYIDGHEIKFELQIICHLSHQHTSRPHPH*HQCYYSLTHTH 710
HQ + H+ H Y LQ H + R H H HQ Y H H
Sbjct: 63 HQRHRHHQHHHQLQYSVYSVSSASLQ---HHHQRQRHRHHQHHHQLQYIQCHQH 113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,916,690
Number of Sequences: 59808
Number of extensions: 306160
Number of successful extensions: 1329
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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