Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00647
         (731 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR542186-1|CAG46983.1|  108|Homo sapiens TBCA protein.                 70   8e-12
CR542170-1|CAG46967.1|  108|Homo sapiens TBCA protein.                 70   8e-12
BT007354-1|AAP36018.1|  108|Homo sapiens tubulin-specific chaper...    70   8e-12
BC105285-1|AAI05286.1|  108|Homo sapiens tubulin folding cofacto...    70   8e-12
BC018210-1|AAH18210.1|  108|Homo sapiens tubulin folding cofacto...    70   8e-12
AK126884-1|BAC86735.1|  175|Homo sapiens protein ( Homo sapiens ...    32   1.8  
BC117305-1|AAI17306.1|  131|Homo sapiens C21orf96 protein protein.     26   2.9  
AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    31   3.2  
CR457211-1|CAG33492.1|  615|Homo sapiens LMO6 protein.                 31   4.3  
BT007423-1|AAP36091.1|  615|Homo sapiens LIM domain only 6 protein.    31   4.3  
BC016856-1|AAH16856.1|  615|Homo sapiens LIM domain only 6 protein.    31   4.3  
BC002468-1|AAH02468.1|  615|Homo sapiens LIM domain only 6 protein.    31   4.3  
AK128083-1|BAC87264.1|  225|Homo sapiens protein ( Homo sapiens ...    31   4.3  
AJ011654-1|CAA09726.1|  615|Homo sapiens triple LIM domain prote...    31   4.3  
AK096940-1|BAC04906.1|  226|Homo sapiens protein ( Homo sapiens ...    30   9.8  

>CR542186-1|CAG46983.1|  108|Homo sapiens TBCA protein.
          Length = 108

 Score = 70.1 bits (164), Expect = 8e-12
 Identities = 32/66 (48%), Positives = 46/66 (69%)
 Frame = +1

Query: 58  MADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQES 237
           MADPR+RQIKIKTGVVKR+             Q+ +I++++ E  + ++I+KQ E+LQES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 238 LMMVPD 255
            MM+PD
Sbjct: 61  RMMIPD 66



 Score = 42.3 bits (95), Expect = 0.002
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = +3

Query: 255 CQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVL 359
           CQRRL  AY DL+  LE E+DL+E EEY  A  VL
Sbjct: 67  CQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVL 101


>CR542170-1|CAG46967.1|  108|Homo sapiens TBCA protein.
          Length = 108

 Score = 70.1 bits (164), Expect = 8e-12
 Identities = 32/66 (48%), Positives = 46/66 (69%)
 Frame = +1

Query: 58  MADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQES 237
           MADPR+RQIKIKTGVVKR+             Q+ +I++++ E  + ++I+KQ E+LQES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 238 LMMVPD 255
            MM+PD
Sbjct: 61  RMMIPD 66



 Score = 42.3 bits (95), Expect = 0.002
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = +3

Query: 255 CQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVL 359
           CQRRL  AY DL+  LE E+DL+E EEY  A  VL
Sbjct: 67  CQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVL 101


>BT007354-1|AAP36018.1|  108|Homo sapiens tubulin-specific chaperone
           a protein.
          Length = 108

 Score = 70.1 bits (164), Expect = 8e-12
 Identities = 32/66 (48%), Positives = 46/66 (69%)
 Frame = +1

Query: 58  MADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQES 237
           MADPR+RQIKIKTGVVKR+             Q+ +I++++ E  + ++I+KQ E+LQES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 238 LMMVPD 255
            MM+PD
Sbjct: 61  RMMIPD 66



 Score = 42.3 bits (95), Expect = 0.002
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = +3

Query: 255 CQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVL 359
           CQRRL  AY DL+  LE E+DL+E EEY  A  VL
Sbjct: 67  CQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVL 101


>BC105285-1|AAI05286.1|  108|Homo sapiens tubulin folding cofactor A
           protein.
          Length = 108

 Score = 70.1 bits (164), Expect = 8e-12
 Identities = 32/66 (48%), Positives = 46/66 (69%)
 Frame = +1

Query: 58  MADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQES 237
           MADPR+RQIKIKTGVVKR+             Q+ +I++++ E  + ++I+KQ E+LQES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 238 LMMVPD 255
            MM+PD
Sbjct: 61  RMMIPD 66



 Score = 42.3 bits (95), Expect = 0.002
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = +3

Query: 255 CQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVL 359
           CQRRL  AY DL+  LE E+DL+E EEY  A  VL
Sbjct: 67  CQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVL 101


>BC018210-1|AAH18210.1|  108|Homo sapiens tubulin folding cofactor A
           protein.
          Length = 108

 Score = 70.1 bits (164), Expect = 8e-12
 Identities = 32/66 (48%), Positives = 46/66 (69%)
 Frame = +1

Query: 58  MADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQES 237
           MADPR+RQIKIKTGVVKR+             Q+ +I++++ E  + ++I+KQ E+LQES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 238 LMMVPD 255
            MM+PD
Sbjct: 61  RMMIPD 66



 Score = 42.3 bits (95), Expect = 0.002
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = +3

Query: 255 CQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVL 359
           CQRRL  AY DL+  LE E+DL+E EEY  A  VL
Sbjct: 67  CQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVL 101


>AK126884-1|BAC86735.1|  175|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44936 fis, clone BRAMY3018121. ).
          Length = 175

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +3

Query: 522 HKSRHQNKCHQEYNKHKFRHSKDYIDGH-EIKFELQIICHL-SHQHTSRPHPH*HQCYYS 695
           H   H   C   +  HK  H+  +I  H  I        H+ ++ HT   +PH H C +S
Sbjct: 108 HTHMHTYTCTCTHT-HKHIHAHIHIHTHTHIYTHTDAYTHMDTYTHT---YPHTHICIHS 163

Query: 696 LTHTHTRT 719
            TH HT T
Sbjct: 164 HTHAHTYT 171


>BC117305-1|AAI17306.1|  131|Homo sapiens C21orf96 protein protein.
          Length = 131

 Score = 26.2 bits (55), Expect(2) = 2.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 671 SLTPMLLLTHTHSHAH 718
           SL+  L LTHTH+H H
Sbjct: 57  SLSLSLYLTHTHTHTH 72



 Score = 24.2 bits (50), Expect(2) = 2.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 695 THTHSHAHRER 727
           THTH+H  RER
Sbjct: 71  THTHTHTQRER 81


>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +3

Query: 567 HKFRHSKDYIDGHEIKFELQIICHLSHQHTSRPHPH*HQCYYSLTHTHTRTES 725
           H + H+  ++  H I   +    H+     + PH H H C +  +H H  T +
Sbjct: 242 HTYTHAHIHVCTH-IHMHIHTYTHMHTHMDTYPHTHIHTCTHMHSHAHINTHT 293



 Score = 31.5 bits (68), Expect = 3.2
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +3

Query: 534 HQNKC-HQEYNKHKFRHSKDYIDGHEIKFELQIICHL-SHQH-TSRPHPH*HQCYYSLTH 704
           H + C H   + H + H   ++D +     +    H+ SH H  +  H H H   ++ TH
Sbjct: 248 HIHVCTHIHMHIHTYTHMHTHMDTYP-HTHIHTCTHMHSHAHINTHTHAHIHMHMHTHTH 306

Query: 705 THTRTES 725
           THT T +
Sbjct: 307 THTYTHA 313


>CR457211-1|CAG33492.1|  615|Homo sapiens LMO6 protein.
          Length = 615

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 501 PPPRQPQHKSRHQNKCHQEYNKHKFR 578
           PPPR P  +  H +  H  +N+H  R
Sbjct: 503 PPPRAPSRRRHHHHNHHHHHNRHPSR 528


>BT007423-1|AAP36091.1|  615|Homo sapiens LIM domain only 6 protein.
          Length = 615

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 501 PPPRQPQHKSRHQNKCHQEYNKHKFR 578
           PPPR P  +  H +  H  +N+H  R
Sbjct: 503 PPPRAPSRRRHHHHNHHHHHNRHPSR 528


>BC016856-1|AAH16856.1|  615|Homo sapiens LIM domain only 6 protein.
          Length = 615

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 501 PPPRQPQHKSRHQNKCHQEYNKHKFR 578
           PPPR P  +  H +  H  +N+H  R
Sbjct: 503 PPPRAPSRRRHHHHNHHHHHNRHPSR 528


>BC002468-1|AAH02468.1|  615|Homo sapiens LIM domain only 6 protein.
          Length = 615

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 501 PPPRQPQHKSRHQNKCHQEYNKHKFR 578
           PPPR P  +  H +  H  +N+H  R
Sbjct: 503 PPPRAPSRRRHHHHNHHHHHNRHPSR 528


>AK128083-1|BAC87264.1|  225|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46204 fis, clone TESTI4009501. ).
          Length = 225

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 637 TSVTSILHGHTLTNTNAITHSHTLTRA 717
           T + ++ H HT  +T+A TH HT TRA
Sbjct: 107 TRILTLSHMHTHAHTHAHTHGHTHTRA 133


>AJ011654-1|CAA09726.1|  615|Homo sapiens triple LIM domain protein
           protein.
          Length = 615

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 501 PPPRQPQHKSRHQNKCHQEYNKHKFR 578
           PPPR P  +  H +  H  +N+H  R
Sbjct: 503 PPPRAPSRRRHHHHNHHHHHNRHPSR 528


>AK096940-1|BAC04906.1|  226|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39621 fis, clone SMINT2001158. ).
          Length = 226

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
 Frame = +3

Query: 495 NVPPPRQPQHKSRHQNKC--HQEYNKHKFRHSKDYIDGHEIKFELQIICHLSHQHTSRP- 665
           N P    P   +  Q     H   + H  +H+  +   H           ++H  T  P 
Sbjct: 108 NTPTHTHPLTSTHIQTSTVTHTHSHTHAHKHTYTHTSTHTHPLTFTHTYPITHPLTHTPT 167

Query: 666 HPH*HQCYYSLTHTHTRTES 725
           H H H   +S TH HT   S
Sbjct: 168 HTHTHALTHSHTHIHTHMHS 187


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,631,106
Number of Sequences: 237096
Number of extensions: 1486290
Number of successful extensions: 8934
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8787
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)