Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00647
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) ide...    47   1e-05
At2g04620.1 68415.m00470 cation efflux family protein potential ...    33   0.20 
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ...    29   2.4  
At1g70280.2 68414.m08086 NHL repeat-containing protein contains ...    29   2.4  
At1g70280.1 68414.m08085 NHL repeat-containing protein contains ...    29   2.4  
At1g15730.1 68414.m01887 PRLI-interacting factor L, putative str...    28   7.3  

>At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL)
           identical to cDNA tubulin folding cofactor A,
           GI:20514256, SP|O04350 Tubulin-specific chaperone A
           (Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin
           cofactor A homolog) {Arabidopsis thaliana}
          Length = 113

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 23/61 (37%), Positives = 34/61 (55%)
 Frame = +1

Query: 73  IRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVP 252
           IR +KIKT   KRI             +  +   +KD+G D +++++QE VL ES MM+P
Sbjct: 4   IRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIP 63

Query: 253 D 255
           D
Sbjct: 64  D 64


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 519 QHKSRHQNKCHQEYNKHKFRHSKDYID-GHEIKFELQIICHLSHQHTSRPHPH*H-QCYY 692
           +H+  HQ   H + +KH+  H  D+    H  K E    C+ +H H  + H H H +C +
Sbjct: 578 KHEEHHQ---HSDSHKHEEHHEHDHHHHSHSHKHEE---CNHNHDHEHQSHSHNHEECNH 631

Query: 693 SLTHTHTRTESDK 731
           +  H H+  + +K
Sbjct: 632 NHDH-HSDHQPEK 643



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +3

Query: 522 HKSR-HQNKCHQEYN-KHKFRHSKDYIDGHEIKFELQIICHLSHQHTSRPHPH*H-QCYY 692
           H+S  H+N+ H +++  HK      + D H  K E     H  H H    H H H +C +
Sbjct: 560 HQSHSHKNEEHHQHSDSHKHEEHHQHSDSH--KHEE----HHEHDHHHHSHSHKHEECNH 613

Query: 693 SLTHTH 710
           +  H H
Sbjct: 614 NHDHEH 619


>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 675

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 597 RCSPCCGETCACCILGDIC-FDDD 529
           +CSPCC      C+ GD C FD D
Sbjct: 381 KCSPCCYFATQSCMKGDDCPFDHD 404


>At1g70280.2 68414.m08086 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 509

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
 Frame = +3

Query: 501 PPPRQPQHKSRHQNKCHQEYNKHKF---RHSKDYIDGHEIKF----ELQIICHLSHQHTS 659
           PPP +P++ +  +       +  K    R S+ +    + +F    + Q   H  HQH  
Sbjct: 370 PPPVEPRNPTPRKTYAFMSKDAEKMQQLRQSRAFYSSWDAEFPNQQQQQQKQHQKHQHQQ 429

Query: 660 RPHPH*HQCYYSLTHTHTRTESDK 731
           +      + Y S+ HT+   +S+K
Sbjct: 430 QQQQQHRRHYSSIPHTYYEQDSEK 453


>At1g70280.1 68414.m08085 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 447

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
 Frame = +3

Query: 501 PPPRQPQHKSRHQNKCHQEYNKHKF---RHSKDYIDGHEIKF----ELQIICHLSHQHTS 659
           PPP +P++ +  +       +  K    R S+ +    + +F    + Q   H  HQH  
Sbjct: 308 PPPVEPRNPTPRKTYAFMSKDAEKMQQLRQSRAFYSSWDAEFPNQQQQQQKQHQKHQHQQ 367

Query: 660 RPHPH*HQCYYSLTHTHTRTESDK 731
           +      + Y S+ HT+   +S+K
Sbjct: 368 QQQQQHRRHYSSIPHTYYEQDSEK 391


>At1g15730.1 68414.m01887 PRLI-interacting factor L, putative strong
           similarity to PRLI-interacting factor L GI:11139268 from
           [Arabidopsis thaliana]; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 448

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +3

Query: 510 RQPQHKSRHQNKCHQEYNKHKFRHSKDYIDGHE 608
           R+      H + CH  +N+H+  H  ++   H+
Sbjct: 314 REGHDDHHHGHDCHDHHNEHEHEHEHEHHHSHD 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,349,366
Number of Sequences: 28952
Number of extensions: 207180
Number of successful extensions: 773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)