Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00646
         (615 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7HMS0 Cluster: RAP domain protein; n=1; Fervidobacteri...    36   0.77 
UniRef50_Q9Y0A1 Cluster: Inositol 1,4,5-trisphosphate receptor; ...    33   7.1  

>UniRef50_A7HMS0 Cluster: RAP domain protein; n=1; Fervidobacterium
            nodosum Rt17-B1|Rep: RAP domain protein -
            Fervidobacterium nodosum Rt17-B1
          Length = 1121

 Score = 35.9 bits (79), Expect = 0.77
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -1

Query: 273  NIFKVKKSKAFFLNFIIYSSKP*VHYL*QKYYGKFCFHKNRMGSVRSSLF 124
            N F V  S+A ++ F++YSS P    L + Y+  F F  N  GS     F
Sbjct: 932  NRFNVATSRAKYVTFVVYSSVPDNFALTRAYFSNFGFEPNVFGSTEQQKF 981


>UniRef50_Q9Y0A1 Cluster: Inositol 1,4,5-trisphosphate receptor; n=7;
            Caenorhabditis|Rep: Inositol 1,4,5-trisphosphate receptor
            - Caenorhabditis elegans
          Length = 2892

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -1

Query: 231  FIIYSSKP*VHYL*QKYYGKFCFHKNRMGSVRSSLFDTFSHIFVSLSNYFAGVLLFLTDL 52
            F ++SS    HYL    + K   HK  +  + S  F   S I V+L+ Y  G+L  +  +
Sbjct: 2485 FAVFSSFLLAHYL---RHDKIYLHKTSLLILASLCFLLLSSIGVTLTLYIFGILQLVNKI 2541

Query: 51   YHEVLFI 31
             H V F+
Sbjct: 2542 VHVVAFV 2548


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 450,950,356
Number of Sequences: 1657284
Number of extensions: 7371419
Number of successful extensions: 14135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14134
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)