Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00646
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    27   2.8  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   6.6  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   6.6  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   6.6  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   6.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   6.6  

>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 122 SKSEDLTLPILFLWKQNFP 178
           SK+EDL  P++F+   NFP
Sbjct: 398 SKNEDLAHPVVFIGATNFP 416


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 180 YGKFCFHKNRMGSVRSSLFDTFSHIFVSLSNYFAGV 73
           Y  +     R+ S+ S  F+    IF+SL NY  GV
Sbjct: 86  YSVYSLLHERLWSLHS--FEDIHEIFISLGNYIEGV 119


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 21/70 (30%), Positives = 29/70 (41%)
 Frame = -2

Query: 566 YHLKFRLHISNILIFYKSA*NKEYRSYPNKVISASQAGSIANTGLSKSKQYFDGSRGSVT 387
           Y  K  L  S     +     +E  S  ++V SAS A    +   + +K  F G +G   
Sbjct: 509 YKAKVWLECSGAYQLHSPGYYEELLSRTDEVESASVAQIDMDINRTMAKNVFFGGKGPGI 568

Query: 386 TCLRPILVVY 357
             LR ILV Y
Sbjct: 569 PKLRRILVAY 578


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 133  RSNTTHSIFVETKFPVI 183
            R N TH + VETK P I
Sbjct: 1072 RDNPTHGLLVETKHPFI 1088


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 506 NKEYRSYPNKVISASQAGSIANTGLSKSKQYFD--GSRGSVTTCLRPIL 366
           ++  ++YP+KV++  + GS     L++++ Y++  GS  S    +  I+
Sbjct: 194 SESLQTYPDKVLTDIELGSYQQVTLNETQTYYEDAGSNESFVARVHEII 242


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 133  RSNTTHSIFVETKFPVI 183
            R N TH + VETK P I
Sbjct: 1072 RDNPTHGLLVETKHPFI 1088


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,199
Number of Sequences: 5004
Number of extensions: 34696
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)