Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00646
         (615 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            25   2.6  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            25   2.6  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   7.8  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 135 SSLFDTFSHIFVSLSNYFAGVLLFLTDLYHEVL 37
           SSLFD F H    + ++  GV +    ++H ++
Sbjct: 894 SSLFDRFDHPEEIMRDFKKGVQMDALQMFHNII 926


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 135 SSLFDTFSHIFVSLSNYFAGVLLFLTDLYHEVL 37
           SSLFD F H    + ++  GV +    ++H ++
Sbjct: 895 SSLFDRFDHPEEIMRDFKKGVQMDALQMFHNII 927


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -2

Query: 572  KFYHLKFRLHISN 534
            ++YH K+++HI N
Sbjct: 1066 EYYHRKYKIHIQN 1078


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 476,243
Number of Sequences: 2352
Number of extensions: 8129
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60132501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)