Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00646
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   9.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.6  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 242 KALLFFTLKILIN 280
           K LLFFT+  LIN
Sbjct: 4   KILLFFTILALIN 16


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 145 THSIFVETKFPVIFLL*IMNLW 210
           T  I+    FP++F+L I+  W
Sbjct: 361 TIDIYSRIGFPILFMLFIILYW 382


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 153 RMGSVRSSLFDTFSHIFVSLSNYFAGVL 70
           + G    S  D+F     S+ NY++G L
Sbjct: 530 QFGDKLESSHDSFQAALRSIENYYSGKL 557


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 153 RMGSVRSSLFDTFSHIFVSLSNYFAGVL 70
           + G    S  D+F     S+ NY++G L
Sbjct: 568 QFGDKLESSHDSFQAALRSIENYYSGKL 595


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,138
Number of Sequences: 438
Number of extensions: 2590
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)