Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00646
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01770.1 68418.m00096 transducin family protein / WD-40 repea...    30   1.4  
At5g45600.1 68418.m05603 YEATS family protein contains Pfam doma...    28   5.7  
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea...    28   5.7  
At1g76320.1 68414.m08866 far-red impaired responsive protein, pu...    27   9.9  

>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein mip1
            (SP:P87141) [Schizosaccharomyces pombe]
          Length = 1354

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -2

Query: 485  PNKVISASQAGSIANTGLSKSKQYF---DGSRGSVT 387
            P K++SASQAG I    L + K+ +   D  RGS+T
Sbjct: 1239 PAKIVSASQAGDIQFLDLRRPKETYLTIDAHRGSLT 1274


>At5g45600.1 68418.m05603 YEATS family protein contains Pfam domain
           PF03366: YEATS family
          Length = 268

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 215 QNHKFIIYNKNITGNFVSTKIEWVVLDLHS 126
           Q+HK+ +Y +  T   +S  ++ VV  LHS
Sbjct: 65  QSHKWAVYVRGATNEDISVVVKKVVFQLHS 94


>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein mip1
            (SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
            PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
          Length = 1344

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 485  PNKVISASQAGSIANTGLSKSKQYF---DGSRGSVT 387
            P KV+SASQAG I    L  ++  +   D  RGS+T
Sbjct: 1230 PAKVVSASQAGDIQFLDLRTTRDTYLTIDAHRGSLT 1265


>At1g76320.1 68414.m08866 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 732

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 135 SSLFDTFSHIFVSLSNYFAGVLLFLTDLYHE 43
           +SLFD + H   SL  +  G  L L D Y E
Sbjct: 390 NSLFDRYVHPETSLKEFLEGYGLMLEDRYEE 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,793,346
Number of Sequences: 28952
Number of extensions: 158310
Number of successful extensions: 233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)