Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00645
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.46 
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ...    27   1.8  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    26   4.2  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   7.4  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    25   7.4  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    25   7.4  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    25   7.4  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   9.8  

>SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 74  FLNHHVVIFHRYKGCRCLVDFKMGDRQESSVHNKNRSDS 190
           F+ HH     R K CR ++  +   R + S+H + RS S
Sbjct: 53  FMLHH----ERIKACRTIISAREQQRTQHSIHRRERSSS 87


>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
           Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 397 IRLEMHMEQVFLDTVDAYVWIYDPKPWYYWVCGILVVL 510
           + L+++  Q F D +  YVW+Y+P P       +L  L
Sbjct: 106 VELQINRNQDFQDDMH-YVWLYEPLPKRVMALAVLFAL 142


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 13  RAKSTHREMAQSECTNEEDKISKSPRGNI 99
           RA+  HR +    C  EE+ I ++ R ++
Sbjct: 177 RARVAHRHLVSGLCATEEEAIERTDRNDM 205


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 544 RPEWEHATVIVPRRPESHRPSSTKASGRRSRRKHRPYPKKLA 419
           R +W +  ++  R  ++ R    K  G+R+    RP PK +A
Sbjct: 330 REQWSYLDILKYRARKAERRKFKKRDGKRTT---RPIPKSIA 368


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 111 KAVDALLTSKWATGKNPAFTTRIEVT 188
           KAV+ L + +W  G+ P+F   +E T
Sbjct: 268 KAVNELQSWEWTFGQTPSFKQHLEST 293


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
 Frame = +1

Query: 448 YVWIY-----DPKPWYYWVCGILVVLGRSRLHVPTL 540
           Y WI+       + +  WVCG + VLG + ++  T+
Sbjct: 114 YFWIFTLASPSSRAFLCWVCGYVSVLGYATIYASTV 149


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 542 ARVGTCNRDRPKTTRIPQTQ*YQGFGS 462
           A++G+ N  RP      Q   YQGFGS
Sbjct: 156 AKLGSINSQRPDDLPPSQGGRYQGFGS 182


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 116 CRCLVDFKMGDRQESS 163
           C CL  +K+GD +ES+
Sbjct: 370 CLCLAHYKLGDYEESN 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,952
Number of Sequences: 5004
Number of extensions: 35127
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)