Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00645
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1476 + 37640278-37642551                                         29   3.3  
01_06_1078 + 34378985-34380064,34380155-34380283,34380362-343804...    29   3.3  
05_04_0433 - 21181713-21183998                                         27   7.5  
04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042     27   7.5  
05_01_0494 - 4120996-4121011,4121152-4121483,4122560-4122706,412...    27   10.0 

>01_06_1476 + 37640278-37642551
          Length = 757

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 420 ASFFGYGRCLRLDLRPEALVLL--GLWDSGRLGTITVA 527
           ASFFGYGR     + P A V +   +W  GR  +  +A
Sbjct: 237 ASFFGYGRGTASGVAPRAHVAMYKAMWPEGRYASDVLA 274


>01_06_1078 +
           34378985-34380064,34380155-34380283,34380362-34380430,
           34380536-34380588,34381309-34381421,34381565-34382132,
           34382520-34382580,34382624-34382665
          Length = 704

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 442 DAYVWIYDPKPWYYWVC 492
           DA  +I D K W YWVC
Sbjct: 85  DAISFIQDTKSWLYWVC 101


>05_04_0433 - 21181713-21183998
          Length = 761

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +3

Query: 417 GASFFGYGRCLRLDLRPEALVLL--GLWDSG 503
           GASFFGY       + P A V +   LWD G
Sbjct: 233 GASFFGYAPGTARGMAPRARVAMYKALWDEG 263


>04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042
          Length = 360

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 502 PESHRPSSTKASGRRSRRKHR--PYPKKLAP 416
           P   RPSS+  S  RSRR+ R  P P++  P
Sbjct: 51  PPPWRPSSSPISAERSRRQRRRLPPPRRAPP 81


>05_01_0494 -
           4120996-4121011,4121152-4121483,4122560-4122706,
           4122818-4122871,4123203-4123367,4125516-4125827,
           4125992-4126078,4126202-4126411
          Length = 440

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 544 RPEWEHATVI--VPRRPESHRPSSTKASGRRSRRKH 443
           +P +EH  +    P  P S RP+ T    RR RR H
Sbjct: 85  QPAFEHPRLRGQKPEEPPSARPTETTRRRRRRRRSH 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,697,826
Number of Sequences: 37544
Number of extensions: 244564
Number of successful extensions: 675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)