Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00645
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)                  29   3.3  

>SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = +1

Query: 394 KIRLEMHMEQVFLDTVD-AYVWIYDPKPWYYWVCGILVV 507
           K++LE+H EQ+F D  D AYVWIYDP     +  GI+VV
Sbjct: 346 KVKLELHEEQIFFDADDEAYVWIYDPVHPKTFAMGIVVV 384


>SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)
          Length = 264

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = -1

Query: 544 RPEWEHATVIVPRRPESHRPSS--TKASGRRSRRKHRPY--PKKLAPY 413
           RP+  H  +  PR  E HRP          R + +HRP   PK L P+
Sbjct: 181 RPQESHRPLEPPRPQEPHRPQEPHRPLEPPRPQEQHRPQEPPKTLEPH 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,795,788
Number of Sequences: 59808
Number of extensions: 289588
Number of successful extensions: 1075
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)