Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00645
(553 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U93239-1|AAB51391.1| 399|Homo sapiens Sec62 protein. 46 7e-05
D87127-1|BAA13254.1| 399|Homo sapiens translocation protein-1 p... 46 7e-05
BC012035-1|AAH12035.1| 399|Homo sapiens TLOC1 protein protein. 46 7e-05
AB024586-1|BAB12685.1| 399|Homo sapiens translocation protein 1... 46 7e-05
BC105971-1|AAI05972.1| 104|Homo sapiens TLOC1 protein protein. 38 0.018
BC003677-1|AAH03677.1| 169|Homo sapiens Unknown (protein for IM... 38 0.018
AL354836-5|CAC22310.1| 3690|Homo sapiens laminin, alpha 5 protein. 32 1.2
AF443072-1|AAM12527.1| 3695|Homo sapiens laminin alpha5 chain pr... 32 1.2
AB011105-1|BAA25459.1| 1645|Homo sapiens KIAA0533 protein protein. 32 1.2
>U93239-1|AAB51391.1| 399|Homo sapiens Sec62 protein.
Length = 399
Score = 46.4 bits (105), Expect = 7e-05
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +1
Query: 391 RKIRLEMHMEQVFLDTVDAYVWIYDPKPWYYWVCGILVVL 510
+K +LE H +QVFLD + YVWIYDP + +V G+++V+
Sbjct: 166 KKFKLEPHDDQVFLDGNEVYVWIYDPVHFKTFVMGLILVI 205
Score = 38.3 bits (85), Expect = 0.018
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 96 YFTGTKAVDALLTSKWA---TGKNPAFTTRIEVTHYLHR 203
YF +KAVD LL SKWA G+ FTTR V Y +R
Sbjct: 46 YFIASKAVDCLLDSKWAKAKKGEEALFTTRESVVDYCNR 84
Score = 37.5 bits (83), Expect = 0.031
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 2 GTSNERRVRIAKWLKANVPTKKTKFLNHHVVIFHRYKGCRCLVDFK 139
G ++ +AK+L+ N PTK T + H V F K CL+D K
Sbjct: 15 GEPSKEEKAVAKYLRFNCPTKSTNMMGHRVDYFIASKAVDCLLDSK 60
>D87127-1|BAA13254.1| 399|Homo sapiens translocation protein-1
protein.
Length = 399
Score = 46.4 bits (105), Expect = 7e-05
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +1
Query: 391 RKIRLEMHMEQVFLDTVDAYVWIYDPKPWYYWVCGILVVL 510
+K +LE H +QVFLD + YVWIYDP + +V G+++V+
Sbjct: 166 KKFKLEPHDDQVFLDGNEVYVWIYDPVHFKTFVMGLILVI 205
Score = 38.3 bits (85), Expect = 0.018
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 96 YFTGTKAVDALLTSKWA---TGKNPAFTTRIEVTHYLHR 203
YF +KAVD LL SKWA G+ FTTR V Y +R
Sbjct: 46 YFIASKAVDCLLDSKWAKAKKGEEALFTTRESVVDYCNR 84
Score = 37.5 bits (83), Expect = 0.031
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 2 GTSNERRVRIAKWLKANVPTKKTKFLNHHVVIFHRYKGCRCLVDFK 139
G ++ +AK+L+ N PTK T + H V F K CL+D K
Sbjct: 15 GEPSKEEKAVAKYLRFNCPTKSTNMMGHRVDYFIASKAVDCLLDSK 60
>BC012035-1|AAH12035.1| 399|Homo sapiens TLOC1 protein protein.
Length = 399
Score = 46.4 bits (105), Expect = 7e-05
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +1
Query: 391 RKIRLEMHMEQVFLDTVDAYVWIYDPKPWYYWVCGILVVL 510
+K +LE H +QVFLD + YVWIYDP + +V G+++V+
Sbjct: 166 KKFKLEPHDDQVFLDGNEVYVWIYDPVHFKTFVMGLILVI 205
Score = 38.3 bits (85), Expect = 0.018
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 96 YFTGTKAVDALLTSKWA---TGKNPAFTTRIEVTHYLHR 203
YF +KAVD LL SKWA G+ FTTR V Y +R
Sbjct: 46 YFIASKAVDCLLDSKWAKAKKGEEALFTTRESVVDYCNR 84
Score = 37.5 bits (83), Expect = 0.031
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 2 GTSNERRVRIAKWLKANVPTKKTKFLNHHVVIFHRYKGCRCLVDFK 139
G ++ +AK+L+ N PTK T + H V F K CL+D K
Sbjct: 15 GEPSKEEKAVAKYLRFNCPTKSTNMMGHRVDYFIASKAVDCLLDSK 60
>AB024586-1|BAB12685.1| 399|Homo sapiens translocation protein 1
protein.
Length = 399
Score = 46.4 bits (105), Expect = 7e-05
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +1
Query: 391 RKIRLEMHMEQVFLDTVDAYVWIYDPKPWYYWVCGILVVL 510
+K +LE H +QVFLD + YVWIYDP + +V G+++V+
Sbjct: 166 KKFKLEPHDDQVFLDGNEVYVWIYDPVHFKTFVMGLILVI 205
Score = 38.3 bits (85), Expect = 0.018
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 96 YFTGTKAVDALLTSKWA---TGKNPAFTTRIEVTHYLHR 203
YF +KAVD LL SKWA G+ FTTR V Y +R
Sbjct: 46 YFIASKAVDCLLDSKWAKAKKGEEALFTTRESVVDYCNR 84
Score = 37.5 bits (83), Expect = 0.031
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 2 GTSNERRVRIAKWLKANVPTKKTKFLNHHVVIFHRYKGCRCLVDFK 139
G ++ +AK+L+ N PTK T + H V F K CL+D K
Sbjct: 15 GEPSKEEKAVAKYLRFNCPTKSTNMMGHRVDYFIASKAVDCLLDSK 60
>BC105971-1|AAI05972.1| 104|Homo sapiens TLOC1 protein protein.
Length = 104
Score = 38.3 bits (85), Expect = 0.018
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 96 YFTGTKAVDALLTSKWA---TGKNPAFTTRIEVTHYLHR 203
YF +KAVD LL SKWA G+ FTTR V Y +R
Sbjct: 8 YFIASKAVDCLLDSKWAKAKKGEEALFTTRESVVDYCNR 46
>BC003677-1|AAH03677.1| 169|Homo sapiens Unknown (protein for
IMAGE:3932691) protein.
Length = 169
Score = 38.3 bits (85), Expect = 0.018
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 96 YFTGTKAVDALLTSKWA---TGKNPAFTTRIEVTHYLHR 203
YF +KAVD LL SKWA G+ FTTR V Y +R
Sbjct: 46 YFIASKAVDCLLDSKWAKAKKGEEALFTTRESVVDYCNR 84
Score = 37.5 bits (83), Expect = 0.031
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 2 GTSNERRVRIAKWLKANVPTKKTKFLNHHVVIFHRYKGCRCLVDFK 139
G ++ +AK+L+ N PTK T + H V F K CL+D K
Sbjct: 15 GEPSKEEKAVAKYLRFNCPTKSTNMMGHRVDYFIASKAVDCLLDSK 60
>AL354836-5|CAC22310.1| 3690|Homo sapiens laminin, alpha 5 protein.
Length = 3690
Score = 32.3 bits (70), Expect = 1.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 249 AHRDLLGPVEEFMQSIDASNESLRFLL*TLDSCRSPILKSTRHLQP 112
A RD L V + S+D + E L L +LD R+P+L+ + P
Sbjct: 2432 AARDTLASVFRLLHSLDQAKEELERLAASLDGARTPLLQRMQTFSP 2477
>AF443072-1|AAM12527.1| 3695|Homo sapiens laminin alpha5 chain
precursor protein.
Length = 3695
Score = 32.3 bits (70), Expect = 1.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 249 AHRDLLGPVEEFMQSIDASNESLRFLL*TLDSCRSPILKSTRHLQP 112
A RD L V + S+D + E L L +LD R+P+L+ + P
Sbjct: 2432 AARDTLASVFRLLHSLDQAKEELERLAASLDGARTPLLQRMQTFSP 2477
>AB011105-1|BAA25459.1| 1645|Homo sapiens KIAA0533 protein protein.
Length = 1645
Score = 32.3 bits (70), Expect = 1.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 249 AHRDLLGPVEEFMQSIDASNESLRFLL*TLDSCRSPILKSTRHLQP 112
A RD L V + S+D + E L L +LD R+P+L+ + P
Sbjct: 382 AARDTLASVFRLLHSLDQAKEELERLAASLDGARTPLLQRMQTFSP 427
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,775,354
Number of Sequences: 237096
Number of extensions: 1407470
Number of successful extensions: 3495
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3495
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5477474182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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